CF835373

Overview
NameCF835373
Unique NameCF835373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:319..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.130e-31
Identity = 64/140 (45.71%), Postives = 91/140 (65.00%), Query Frame = 2
Query:  104 LYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSR 523
            +Y +LW+ CAGPL  +P+ GE+VYYFPQGHIE +E ST    D   P++DLPSK+ CRV+ +  K + +TDE +AQ++L+P++ +    V          R  V+ F K LTASD S  GG  + +++A EC PPLDMS+
Sbjct:   22 MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAIDRKVDKNTDEVYAQISLMPDTTE----VMTHNTTMDTRRPIVYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQ 157          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.203e-30
Identity = 74/170 (43.53%), Postives = 98/170 (57.65%), Query Frame = 2
Query:   41 ERQNSNSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAV---EKEXXXXXXXRFH--VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            E   +N ++    R G    A+  ELWHACAGP+  +PR+G  V Y PQGH+E +  +    A        +P  + CRV++V L A+  TDE +AQ++L+PE  +        E E       RF    H FCKTLTASDTSTHGGFSV RR A++C PPLD S+Q P+
Sbjct:   18 EEVAANGSSPAPARAG----AVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAA----VPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPS 179          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.805e-29
Identity = 71/155 (45.81%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAV-----------EKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            A+  ELWHACAGP+  +PR+G  V Y PQGH+E + A     A    P   +P  + CRV++V L A+  TDE +AQV+L+ ++ + E  +           E E       R   H FCKTLTASDTSTHGGFSV RR A++C PPLD S Q P
Sbjct:   35 AVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGA-----APGSGPGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIP-HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRP 183          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.689e-27
Identity = 68/169 (40.24%), Postives = 93/169 (55.03%), Query Frame = 2
Query:   56 NSTTSGVKRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPES-----NQDENAVEKEXXXXXXXRFH----VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            N+T SG +        +  +LWHACAGP+V++PR G  V Y PQGH+    A      +  +    LP  + CRV++V+L A+  TDE +A++ L  E      N     +E+E              +H FCKTLTASDTSTHGGFSV RR A++C PPLD  +  P+
Sbjct:   63 NNTASGGEEDAPAPGPVCRDLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVA---LPPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPS 228          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 3.522e-25
Identity = 63/155 (40.65%), Postives = 84/155 (54.19%), Query Frame = 2
Query:  101 ALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQ----------DENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPT 535
            A+  ELWHACAGP V +PR G  + Y PQ H+   +    +V         +P  + CRV+ V+L+A+  TDE +A++ L+ E             ++ A E E           H FCKTLTASDTSTHGGFSV RR A++C PPLD     P+
Sbjct:   19 AVCGELWHACAGPGVALPRRGSALVYLPQAHLA-ADGGGGEVPPAGAAA--VPPHVACRVVGVELRADAATDEVYARLALVAEGEMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPS 170          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.636e-22
Identity = 58/146 (39.73%), Postives = 80/146 (54.79%), Query Frame = 2
Query:   95 EMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            E  +  +LW ACAG + TVP  G  VYYFPQGH E        +A  ++    +P+ + CRV +V+  A+PDTDE FA++ L+P    ++  VE++            SF KTLT SD +  GGFSV R  A+   P LD +  PP
Sbjct:   15 ERCVDRQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALG----LAAPELSAARVPALVPCRVASVRYMADPDTDEVFARIRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPP 156          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.761e-22
Identity = 60/158 (37.97%), Postives = 83/158 (52.53%), Query Frame = 2
Query:   77 KRVGDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLP-ESNQDENAVEKEXXXXXXXRFHVH-----SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            +R  + +  L  +LWHACAG +V +P    +VYYFPQGH E  +         + P   +P+ +LCRV  V+  A+PDTDE FA++ L+P  +N+   A + +                 SF KTLT SD +  GGFSV R  A+   P LD S  PP
Sbjct:   11 ERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGH----GPVEFPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPP 164          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.874e-21
Identity = 61/156 (39.10%), Postives = 81/156 (51.92%), Query Frame = 2
Query:   89 DPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQD---EN-----AVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            + E +L  +LWHACAG +V +P     V+YF QGH E   A  +  A +      +P  ILCRV++V+  A+ +TDE FA++TLLP    D   EN                 +    SF KTLT SD +  GGFSV R  A+   P LD S +PP
Sbjct:    2 EQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAPR------VPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPP 151          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 59/155 (38.06%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQD------ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            GD   ++ ++LW ACAG + +VP  G  VYYFPQGH EQ  A+ +  + +      +P  + CRV+ V+  A+ ++DE FA++ L+P    D      E A  +        R    SF KTLT SD +  GGFSV R  A+   P LD S +PP
Sbjct:   13 GDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSSAR------VPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPP 161          
BLAST of CF835373 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 59/155 (38.06%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   86 GDPEMALYTELWHACAGPLVTVPREGERVYYFPQGHIEQVEASTNQVADQQMPVYDLPSKILCRVINVQLKAEPDTDEAFAQVTLLPESNQD------ENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPP 532
            GD   ++ ++LW ACAG + +VP  G  VYYFPQGH EQ  A+ +  + +      +P  + CRV+ V+  A+ ++DE FA++ L+P    D      E A  +        R    SF KTLT SD +  GGFSV R  A+   P LD S +PP
Sbjct:   13 GDGGGSVDSQLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVDLSSAR------VPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPP 161          
The following BLAST results are available for this feature:
BLAST of CF835373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ARFM_ARATH1.130e-3145.71Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFO_ORYSJ6.203e-3043.53Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFB_ORYSJ1.805e-2945.81Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]
ARFC_ORYSJ1.689e-2740.24Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]
ARFN_ORYSJ3.522e-2540.65Auxin response factor 14 OS=Oryza sativa subsp. ja... [more]
ARFH_ORYSJ1.636e-2239.73Auxin response factor 8 OS=Oryza sativa subsp. jap... [more]
ARFR_ORYSJ4.761e-2237.97Auxin response factor 18 OS=Oryza sativa subsp. ja... [more]
ARFJ_ARATH6.874e-2139.10Auxin response factor 10 OS=Arabidopsis thaliana G... [more]
ARFJ_ORYSJ2.000e-2038.06Auxin response factor 10 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSI2.000e-2038.06Auxin responsive factor 10 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C04_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835373 ID=CF835373; Name=CF835373; organism=Citrus sinensis; type=EST; length=537bp
ACCCATTAAGTCTTGTAACGAGACTGGTAGAATTCCTATGGAACGGCAGA
ATAGTAATTCCACAACTTCCGGTGTCAAACGAGTTGGGGACCCCGAAATG
GCGCTCTACACGGAGCTGTGGCATGCCTGCGCCGGACCTTTGGTCACCGT
CCCTCGAGAAGGCGAGCGCGTGTACTACTTCCCTCAAGGCCACATAGAGC
AGGTGGAAGCGTCAACTAATCAGGTCGCAGACCAGCAAATGCCAGTTTAT
GATCTTCCTTCAAAGATACTCTGTCGTGTAATTAACGTCCAATTAAAGGC
TGAACCTGATACTGATGAGGCGTTTGCTCAAGTGACTTTACTTCCAGAGT
CAAACCAAGATGAGAACGCGGTGGAGAAAGAACCACCTCCACCCCCGCCA
CCAAGATTTCACGTGCATTCGTTTTGTAAAACACTAACGGCATCGGATAC
AAGTACTCATGGTGGGTTTTCGGTACTGAGACGGCATGCTGATGAGTGTC
TTCCACCCTTGGACATGTCACGGCAGCCTCCCACACA
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