CF835374

Overview
NameCF835374
Unique NameCF835374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:310..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.252e-13
Identity = 51/159 (32.08%), Postives = 87/159 (54.72%), Query Frame = -2
Query:  314 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 772
            MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + + E +I + + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +GK  KP +SLP
Sbjct:   88 MDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGK-DKPKISLP 243          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.165e-13
Identity = 39/152 (25.66%), Postives = 76/152 (50.00%), Query Frame = -2
Query:  317 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 772
            MD +S P  N+++R+L    G+  ++ +   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G++ G + +IK   K K   + IH++   G +   +  ++  IG+     +SL
Sbjct:   87 MDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.066e-12
Identity = 44/160 (27.50%), Postives = 83/160 (51.88%), Query Frame = -2
Query:  317 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 772
            MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   88 MDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.066e-12
Identity = 44/160 (27.50%), Postives = 83/160 (51.88%), Query Frame = -2
Query:  317 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 772
            MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   88 MDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.376e-12
Identity = 50/159 (31.45%), Postives = 87/159 (54.72%), Query Frame = -2
Query:  314 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 772
            MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + + E +I + + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +G+  KP +SLP
Sbjct:   88 MDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.027e-12
Identity = 48/152 (31.58%), Postives = 77/152 (50.66%), Query Frame = -2
Query:  317 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 769
            DV+++P  NE +R+L D KGR  LH L +     KLC++ +    + G   +N  DG  I   +      D++ L + + ++   +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   83 DVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNEY-GTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.540e-11
Identity = 49/156 (31.41%), Postives = 73/156 (46.79%), Query Frame = -2
Query:  311 FMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPK 775
            FMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + + + KI++ IK   GN   +T G +  + G I   E  +G S   +H Q+     F+T   +VF IG     +V  P+
Sbjct:   82 FMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSPE 231          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.011e-11
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = -2
Query:  341 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 772
            MDV+SIP+   N+R++ D     RL  +   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L    + D ++FD G+ V+VT GR  GR+G +      +G    I ++D    E + R    N+  +GK
Sbjct:   88 MDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.627e-11
Identity = 48/169 (28.40%), Postives = 86/169 (50.89%), Query Frame = -2
Query:  311 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEEN------KITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFE-TIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPK 772
            MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L E       K+ D I F+ G  V    GR+ G VG +   +  +G  E  I +++  G +F T  G +  IGK  +P V++ K
Sbjct:   91 MDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK-DEPLVTVRK 258          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.430e-11
Identity = 48/158 (30.38%), Postives = 78/158 (49.37%), Query Frame = -2
Query:  296 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIK 769
            D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N +DG T+   +   K  D++ L + E KI     + VG++VMVT G++ G +G +K  +  + S     +      +F T    VF IGK S      P  +G+K
Sbjct:   85 DTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233          
The following BLAST results are available for this feature:
BLAST of CF835374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RS4E_PYRHO6.252e-1332.0830S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4_BIGNA8.165e-1325.6640S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_METVS1.066e-1227.5030S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.066e-1227.5030S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_PYRAB2.376e-1231.4530S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METAC9.027e-1231.5830S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_THEAC1.540e-1131.4130S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_KORCO2.011e-1130.1430S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_METKA2.627e-1128.4030S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_UNCMA3.430e-1130.3830S ribosomal protein S4e OS=Uncultured methanogen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835374 ID=CF835374; Name=CF835374; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTAAGAGATACATGAACTTAGATTAAATCTTTGAAA
ATAACATCCACCAAATAGTAGCTAAAATAAAAACGGACAAAGCAGGTTCA
AAATTGTGCTGATAAAAATAAAAATAAAAATAAAGATTCATTTTTGCATC
GGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAA
AAAACAAAGCAGCAAAATGCATCCAAATTCATTGTAAAAGCTTAAGCAGC
AGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAA
TACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATG
GTGAACACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTG
AATATGGATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGA
TTCCAACTCGACCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCA
ACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTT
GATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCC
CATCATAGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGAT
CTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAG
ACGGAAGCGACCCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTCT
TGGGAATTGACACAACATCCATGAAA
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