CF835374

Overview
NameCF835374
Unique NameCF835374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:310..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.430e-11
Identity = 48/152 (31.58%), Postives = 74/152 (48.68%), Query Frame = -2
Query:  317 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 769
            DV+++P  NE +R+  D KGR  LH L       KLC++ +    + G   +N  DG  I   +      D++ L L + +I   ++F VGN+ MV GG++ G +G I + RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   83 DVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNEY-STKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSSRHNTVAISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.851e-11
Identity = 44/160 (27.50%), Postives = 80/160 (50.00%), Query Frame = -2
Query:  317 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 772
            MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + + K  D++ + + E  I   + F  G +  VTGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   88 MDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 49/158 (31.01%), Postives = 83/158 (52.53%), Query Frame = -2
Query:  314 MDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 772
            MDVVSIP+T E++R+L +  G+  LH + ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + + E +I + + F+ G  V VT G+N  R G I++ +    G  + + I+D  G  F T     F +G   KP +SLP
Sbjct:   88 MDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.642e-11
Identity = 54/166 (32.53%), Postives = 84/166 (50.60%), Query Frame = -2
Query:  308 MDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 772
            MDV+ I   +E +R++ Y  K    +  +  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + + E +I D++ F+ G I +V  GRN GRVG I+   K  G  +T + ++D     F T    VF IGK  +P + LP+G
Sbjct:   89 MDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPIGK-EEPLIKLPEG 252          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 47/152 (30.92%), Postives = 76/152 (50.00%), Query Frame = -2
Query:  317 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 769
            DV+++P  NE +R+L D KGR  L+ L +     KLC++ +    + G   +N  DG  I   +      D++ L + +  +   +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   83 DVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-GTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CF835374 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.981e-11
Identity = 48/150 (32.00%), Postives = 75/150 (50.00%), Query Frame = -2
Query:  335 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFATRLGNVFTIGKGS 769
            D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L+E   N+I D   F  GN+ M+ GG++ G VG I       GS     I   ++ G  F T    V  +G+ S
Sbjct:   83 DIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFETIDEYVVMVGRES 231          
The following BLAST results are available for this feature:
BLAST of CF835374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
RS4E_METBF3.430e-1131.5830S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_METM55.851e-1127.5030S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_PYRFU7.642e-1131.0130S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_IGNH47.642e-1132.5330S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_METMA9.981e-1130.9230S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_METHJ9.981e-1132.0030S ribosomal protein S4e OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835374 ID=CF835374; Name=CF835374; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTAAGAGATACATGAACTTAGATTAAATCTTTGAAA
ATAACATCCACCAAATAGTAGCTAAAATAAAAACGGACAAAGCAGGTTCA
AAATTGTGCTGATAAAAATAAAAATAAAAATAAAGATTCATTTTTGCATC
GGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAACAAGAA
AAAACAAAGCAGCAAAATGCATCCAAATTCATTGTAAAAGCTTAAGCAGC
AGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACAACTTAA
TACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTCCCGATG
GTGAACACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGCATCTTG
AATATGGATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTTGATGA
TTCCAACTCGACCTCTGTTTCTACCCCCAGTGACCATGACAATATTCCCA
ACATCAAACTTGATGAAGTCAGTGATCTTGTTCTCTTCTAAGTCAAGTTT
GATGGTATCATTGGCTTTGATGAGTGGGTCAGGGTAGCGGATGGTACGCC
CATCATAGGTGTTGATGTATGGGATACCTTTCTGGCCAAACTGGACTGAT
CTAACTTTGCAAAGCTTGAATTTTGCCTCCTCATCTCTGAGGGAATGGAG
ACGGAAGCGACCCTTGGTGTCATAAAGGAGACGGAAGTTCTCGTTGGTCT
TGGGAATTGACACAACATCCATGAAA
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