CF835375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 64/220 (29.09%), Postives = 109/220 (49.55%), Query Frame = 3 Query: 81 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTI 737 K + AP+ + + +A G HK +PL++ LR+ LK RE+ IL V+VDGKV ++ GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ IK D++ + + + +I D +KF GN V +TGG + G + IK+ E S E +H+ + F+T VF + Sbjct: 6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVM 219
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18 Identity = 56/201 (27.86%), Postives = 100/201 (49.75%), Query Frame = 3 Query: 66 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 665 + H KRL+ P W +++ F K +GPH +PL++VLR+ L YA +E L + +VL++GK +D+ P G D+++ + E +R+ GR L ++ + A+ KL K+ + G + +DG T I D A D+I + E+ ++ +++ G +V G + G VG ++ + GS Sbjct: 1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18 Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 3 Query: 66 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 665 + +H KRL P W +++ F K +GPH +PL+++LR+ L Y + +E L VLV+G +D+ P G D+++ P+ E FR+ D GR L S+ +E A +L K+ + G + +DG + D D+I +D E + +++ G +V G++ GR+G + + + GS Sbjct: 1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGS 200 The following BLAST results are available for this feature:
BLAST of CF835375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835375 ID=CF835375; Name=CF835375; organism=Citrus sinensis; type=EST; length=737bpback to top |