CF835375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.346e-35 Identity = 88/238 (36.97%), Postives = 131/238 (55.04%), Query Frame = 3 Query: 54 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 MAR G ++HLK L APK W + + G F KPS GPH +PL++++R+ L YA T RE ++ + H +DG+VR + YP GFMDV+ I T E +R+L F LH + EEA+FKL ++ + G ++ +DGR IR DP K T+K+ + E ++ + +VG++V++ GGRN GRVG I + + + I+DA G + T L VF I Sbjct: 1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVI 238
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35 Identity = 90/238 (37.82%), Postives = 133/238 (55.88%), Query Frame = 3 Query: 54 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTI 737 MAR G ++ LK L AP+ W + + +A KP GPH + + LPL+L++RN L YA T RE ++ + H VDG VR D +P GFMDV+ + T E FR+L F+LH + +EE K ++ + + G +N +DGR I R DP + + DT+ + + +I IKF G I ++ GGRN GRVG++K+ +K G T + ++DA G+ F T L VF I Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVI 238
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34 Identity = 86/234 (36.75%), Postives = 128/234 (54.70%), Query Frame = 3 Query: 60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 +G K+HLKRL AP W L + F +P G H E LPL+L++R+ LKYA RE I+ VLVDG+VR ++ P G MDVVS+P NEN+R+L+D KGR +L E KLCK+++ + G +N +DGR I+ DP + K DT+ + + E +I I F+VG + +TGG++ G I E+ + + +++ G +F T VF + Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVV 235
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34 Identity = 90/241 (37.34%), Postives = 134/241 (55.60%), Query Frame = 3 Query: 54 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 MAR G KKHLK L APK W + + +A KPS GPH C PL++++R+ L YA T RE ++ + H VDG+VR + YP G MDV+ I T E +R++ L + EEAK+KL ++ + + G +N +DGR I+ DP + K T+++ + E +I ++I D G +V+++GGRN GRVG I K +H+ + I+D G++F T L VF I Sbjct: 1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPI 238
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 4.525e-34 Identity = 85/225 (37.78%), Postives = 121/225 (53.78%), Query Frame = 3 Query: 63 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 G +KHLKR APK W + K + K S+GPH E +PL++VLR+ L A RE IL VLVDG R + +P GFMDV+SIPK N+ FR+L D KGR L + ++++ FKL K+ + G +N GR I D K D + L++ E KI+D IKF+ G + ++TGG++ VG I + + S + + F T VF + Sbjct: 5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKIDEIKITQSSKSNTVLMETEEGSFLTLARYVFVV 228
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 7.719e-34 Identity = 81/234 (34.62%), Postives = 124/234 (52.99%), Query Frame = 3 Query: 60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 +G +KHLKRL APK+W + + + +PS+GPH LPL+LVLR+ L YA RE ++ VLVDG R D YP G MDV+S+P NE+F ++ D KGR +L+ ++D KLCK+ + + G +N +DGR + + + K D + L + E I ++F G + +TGG++ G I EK + + I ++ G +F T VF + Sbjct: 4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKTIRDYVFIV 235
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 8.535e-33 Identity = 84/231 (36.36%), Postives = 130/231 (56.28%), Query Frame = 3 Query: 60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 +G K+HLKRL AP W + + +A +PS GPH + +PLI ++R+ L YA T RE IL + +LVDG+VR D +P G MDVVSIP+T E++R+L + G+ LH + +EEAK K ++ + + + +N +DG ++ D K + T+ + + E +I + F+VG V VT G+N R G I++ R+ G + + I+D G F T F I Sbjct: 4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIEDENGELFDTLKEYAFVI 233
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.232e-31 Identity = 81/232 (34.91%), Postives = 130/232 (56.03%), Query Frame = 3 Query: 60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 +G K+HLKRL AP W +++ +A +P GPH R +PL+ ++R+ L YA T RE IL + LVDGKVR D +P G MDVVSIP+T E++R+L + G+ LH + +EEA K ++R+ + + +N +DG + PL + ++ T+ + + E +I + + F+ G V VT G+N R G I++ ++ G + + I+D G F T F + Sbjct: 4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVV 233
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31 Identity = 75/234 (32.05%), Postives = 125/234 (53.42%), Query Frame = 3 Query: 60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 +G +KHLKRL AP +W L + F +PS GPH + LPL+L++R+ LK A RE I+ +L+DG R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K D++ + L E + ++F+ G + +TGG++ G + EK + + +++ G +F T VF + Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIV 235
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31 Identity = 75/234 (32.05%), Postives = 125/234 (53.42%), Query Frame = 3 Query: 60 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 +G +KHLKRL AP +W L + F +PS GPH + LPL+L++R+ LK A RE I+ +L+DG R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K D++ + L E + ++F+ G + +TGG++ G + EK + + +++ G +F T VF + Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIV 235 The following BLAST results are available for this feature:
BLAST of CF835375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835375 ID=CF835375; Name=CF835375; organism=Citrus sinensis; type=EST; length=737bpback to top |