CF835375

Overview
NameCF835375
Unique NameCF835375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:3..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 78/241 (32.37%), Postives = 128/241 (53.11%), Query Frame = 3
Query:   63 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEEN------KITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFE-TIHIQDALGHEFATRLGNVFTI 737
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VDG VR +  +P G MDVV IP+T + +R++ +   R  +  + +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L E       K+ D I F+ G  V    GR+ G VG +   +  +G  E  I +++  G +F T  G +  I
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAI 247          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.846e-28
Identity = 85/241 (35.27%), Postives = 128/241 (53.11%), Query Frame = 3
Query:   54 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTI 737
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VDG+VR D  +P G MDV+ I   +E +R++ Y  K    +  +  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + + E +I D++ F+ G I +V  GRN GRVG I+   K  G  +T + ++D     F T    VF I
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPI 240          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.405e-27
Identity = 69/189 (36.51%), Postives = 104/189 (55.03%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIK 641
            HLKR+ AP+ W + +    +  KP  G H     +PL++VLR+ LK A    E+  IL +  VLVDGKVR D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N +DG T+   +   K  D++ L + E KI     + VG++VMVT G++ G +G +K
Sbjct:    5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVK 190          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.141e-27
Identity = 71/204 (34.80%), Postives = 106/204 (51.96%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHI 683
            H KRL+ PK W + K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  LH L +     KLC++ +    + G   +N  DG  I   +      D++ L + + ++   +KF+VGN+ MV GG++ G  G I++ RE       T+ I
Sbjct:    3 HQKRLSVPKSWKVGKKGNKWISTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMI 204          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.659e-26
Identity = 75/227 (33.04%), Postives = 115/227 (50.66%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R  AP   M+ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR+L D     R   +  +EA++K  ++ +    ++G   +N  DGR I   +      K   T+K++L   +I D       +  +  GGRN G  GI+KN    K     +  I ++   G+ + T + NV +I
Sbjct:    3 HITRFEAPWFLMISKKQYKWTVRPNAGPHSIEKSIPLAVVIRDYLKLAGTIREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSI 229          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +I
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSI 229          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +I
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSI 229          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +I
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSI 229          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +I
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSI 229          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +I
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSI 229          
The following BLAST results are available for this feature:
BLAST of CF835375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_METKA7.477e-2932.3730S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_IGNH44.846e-2835.2730S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_UNCMA2.405e-2736.5130S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_METAC3.141e-2734.8030S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_SULSO2.659e-2633.0430S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_SULIY4.536e-2632.1630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN4.536e-2632.1630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM4.536e-2632.1630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL4.536e-2632.1630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK4.536e-2632.1630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835375 ID=CF835375; Name=CF835375; organism=Citrus sinensis; type=EST; length=737bp
ACGATAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCACCCTCACA
AAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAA
GCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCAT
CTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGA
AACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGAT
GCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACC
CTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTC
CGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGA
TGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCC
AGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTAC
CCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGA
GAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGG
TCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAGGGAA
AAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCA
TGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATC
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