CF835375

Overview
NameCF835375
Unique NameCF835375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:3..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 73/227 (32.16%), Postives = 113/227 (49.78%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +I
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSI 229          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 70/204 (34.31%), Postives = 105/204 (51.47%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHI 683
            H KRL+ PK W + + G  +      GPH     LPL L++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+L D KGR  L+ L +     KLC++ +    + G   +N  DG  I   +      D++ L + +  +   +KF+VGN+ MV GG++ G  G I++ RE       T+ I
Sbjct:    3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMI 204          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 68/197 (34.52%), Postives = 99/197 (50.25%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 665
            H KRL+ P+ W   K G  +      GPH     LPL +++R+ LK     RE   IL +  VLVDG  R D  +P G  DV+++P  NE +R+  D KGR  LH L       KLC++ +    + G   +N  DG  I   +      D++ L L + +I   ++F VGN+ MV GG++ G +G I    + K S
Sbjct:    3 HQKRLSIPRSWKAGKKGYKWVSTTRPGPHSQARSLPLGIIIRDILKLVDNSREGKRILSEGKVLVDGIPRKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSS 197          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.724e-25
Identity = 70/224 (31.25%), Postives = 111/224 (49.55%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VDGKVR D  YP G MDV+ +   NE +R++ D     R   +   EA  K+C++      + G   +N +DGR I       +  +T   + ++LE+ K+ D+        V+   G N GR G + N  +     + I    A   EF T L  +  I
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVI 226          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 632
            HL+R  AP  W +  K+GG +  + S GPH     LPL +++R+ LKYA T RE   I+ + +V +DG +R D  +P G MDVV I  T E +R++ D K  + L  +  EEA  KL +V      + G   ++ +DGR +     +   IK  DT+  DL+   I   I F +G   +VT G N G  G
Sbjct:    3 HLRRTTAPYWWPIPRKIGGVWVVRSSPGPHSLAYSLPLAIIIRDVLKYAKTMREARYIISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24
Identity = 73/190 (38.42%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 632
            HL+R  AP  W +  K GG +  KPS GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDV+ I  T E +R++ D    + L  +   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DLE   I   I   +G + +VT G N G  G
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24
Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 632
            HL++  AP  W +  K GG +A +PS+GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDVV I  T E +R++ D    + L  +   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G + +VT G N G VG
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRG 623
            HL+R  +P  W +  K GG +A +PS GPH     +PL LV+R+ L+YA T RE   I+ + ++ VDG VR +  +P G MDVV I  T E +R++ D +  + L  +  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G N G
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.235e-23
Identity = 68/229 (29.69%), Postives = 111/229 (48.47%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN---REKHKGSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R  AP    L K    +  + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VDG+VR D  +P G MDV+SIP ++  FR++ D         +  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++    I    +   G   ++ GGRN G  G+IK     +  K  +  + I+   G    T L NV  I
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVI 231          
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 73/232 (31.47%), Postives = 112/232 (48.28%), Query Frame = 3
Query:   75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRN---RGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737
            H+ R  AP    + K    +  +  +GPHK +E +PL ++L+  LK   T RE   I+    VLVDGKVR D  YP G MDVV IP  +   R++ D        ++  E+AK+K  ++ +    + G+  +N  DGR I        +Y  P +    T+K++L E KIT       G   M+ GGRN    G++  I+  +  +  +  + ++   G  F T L NV  I
Sbjct:    3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAI 231          
The following BLAST results are available for this feature:
BLAST of CF835375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULIA4.536e-2632.1630S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_METMA4.536e-2634.3130S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_METBF1.011e-2534.5230S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_CALMQ1.724e-2531.2530S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_PYRIL1.117e-2436.3230S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_PYRAR3.251e-2438.4230S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_PYRCJ4.245e-2436.3230S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_THENV1.235e-2335.2930S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_SULTO1.235e-2329.6930S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]
RS4E_SULAC3.594e-2331.4730S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C05_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835375 ID=CF835375; Name=CF835375; organism=Citrus sinensis; type=EST; length=737bp
ACGATAGAACAGACAAGCAGCCGCAGCGAGGCAGCAGCTTCACCCTCACA
AAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCAATGCCCCTAA
GCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCTAAGCCATCAT
CTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCTTGTATTGCGA
AACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTGCTATTCTGAT
GCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGATAAGACCTACC
CTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACTTC
CGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGAGA
TGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGGCC
AGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCTAC
CCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAAGA
GAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCATGG
TCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAGGGAA
AAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGTCA
TGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATC
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