CF835375
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22 Identity = 60/228 (26.32%), Postives = 112/228 (49.12%), Query Frame = 3 Query: 54 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 MA+G+KKH KR+++ K G F K SSGPH + + L+ +++ A +E ++ + V+GK +P MD +S P N+++R+L G+ ++ + E K+CKV + I T D R ++ IK D++ + ++I +KF+VG++ ++T G++ G + +IK K K + IH++ G + + ++ I Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVI 228
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22 Identity = 67/218 (30.73%), Postives = 111/218 (50.92%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF--ETIHIQDALGHEFAT 713 HLKR+ +PK W + + F K S GPH ++ LP+++ R+++ +E +L +R ++V+G+ G D+VSIPK+ +++R+L D KGR + ++ A +L K+ + + G +N DG + D K+ D+I L L+E N+I D F GN+ M+ GG++ G VG I GS I ++ G F T Sbjct: 4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRIIEHIPVPGSLPNRVILKDESSGESFET 219
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.190e-22 Identity = 73/226 (32.30%), Postives = 110/226 (48.67%), Query Frame = 3 Query: 66 LKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 737 +K+HL+ L P+ W + K G + KPS GPH +P+ + LR+ L A REV +L VLVDG+ D +P G DV++IP+ NE +R+L D +G+ L + EEA K K +R V I Y T DGRT D K + + ++ KI + I + + G++ GR+G+IK K + I + G T L N+ + Sbjct: 5 IKRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAE (30S ribosomal protein S4e OS=Pyrobaculum aerophilum GN=rps4e PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22 Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR---TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGII 638 HL+R AP W + K GG + +PS GPH LPL L++R+ LKYA T E I+ + +V VDG VR D +P G MDV+ I T E +R++ D + L + EEA KL +V + G ++ +DGR T IK D++ DL I I +G +V G N G G + Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVKGGRIQLHFHDGRNLITTLEAGKQIKTFDSVLYDLRNKAIKAHIPLKLGVNAVVIHGSNVGFSGTL 194
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20 Identity = 68/220 (30.91%), Postives = 104/220 (47.27%), Query Frame = 3 Query: 81 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTI 737 KRL + + + + P P+ G H + + L+ ++R+ LK + RE IL V VDGK +K + GFMDV+ I E++R++Y+ +G L E A KL KVRS + T+DGRT D K D + + + KI++ IK GN +T G + + G I E +G S +H Q+ F+T +VF I Sbjct: 6 KRLMVSRQVKIPRKTYFWGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMI 219
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_METS5 (30S ribosomal protein S4e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4e PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.857e-20 Identity = 66/229 (28.82%), Postives = 106/229 (46.29%), Query Frame = 3 Query: 75 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDP-----LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREK---HKGSFETIHIQDALGHEFATRLGNVFTI 737 H+ RL AP K + + S GPH + +PL L+LR+ L + + +E I+ VLVDG+VR D YP G MDV++IP + R++ D + + +EE+KFKL ++ + + G+ N DGR + + T+K+ + +I F VM GG+N G +G +K + + + I+ G E+ T L N I Sbjct: 3 HITRLEAPWFLRASKKEYKWTVRASPGPHPLGKSIPLGLLLRDYLAFTSSLKESKKIISDGKVLVDGRVRRDYKYPVGLMDVIAIPHADLYLRIVPDRARLLKPVKISEEESKFKLVRLLNKTLVKGGLLQFNLEDGRNLLISKESTEMFKLPTLTTLKISIPNQEILGVYGFKENVYVMAVGGKNAGIIGQLKRIQTSPYKTRRYSIVVIRSPDGSEYETNLENAMVI 231
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.286e-20 Identity = 66/220 (30.00%), Postives = 104/220 (47.27%), Query Frame = 3 Query: 81 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNRE-KHKGSFETIHIQDALGHEFATRLGNVFTI 737 KRL P+ + + + P P G HK+ + L+ ++R+ L+ + RE IL V VDGKV ++ + GFMDV+ I + E++R++Y+ +G L S + A K +V++ + +DGR + D I D + L + KIT+ IK GN +TGG + G G I E K S +H + F T +VF I Sbjct: 6 KRLMVPRTVKIPRKTYFWGPTPLPGRHKADHSVTLLTIIRDYLRLSDKEREATRILANGLVKVDGKVVKERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEG----FTTVKDHVFVI 219
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_HALSA (30S ribosomal protein S4e OS=Halobacterium salinarium GN=rps4e PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19 Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 3 Query: 66 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 698 + H KRL+ PK W +++ F K +GPH +PL++VLR+ L+Y E + VLV+G D P G D+++ P +E +R+ D GR L + + A KL KV G +N +DG + + D++ +D + N+I +++ G +V G++ G +G I GS T+ + D G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_HALS3 (30S ribosomal protein S4e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps4e PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19 Identity = 59/212 (27.83%), Postives = 98/212 (46.23%), Query Frame = 3 Query: 66 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS-FETIHIQDALG 698 + H KRL+ PK W +++ F K +GPH +PL++VLR+ L+Y E + VLV+G D P G D+++ P +E +R+ D GR L + + A KL KV G +N +DG + + D++ +D + N+I +++ G +V G++ G +G I GS T+ + D G Sbjct: 1 MTNHQKRLSVPKSWPVERKTETFTAKAGAGPH-GESGVPLVVVLRDVLEYVDDTSEAQYAINTDGVLVNGDSVGDVNRPIGMFDILAFPDRDEYYRVFPDEGGRLGLTEIDADAAGSKLNKVTDKTTVSGGRTQLNFHDGSNLALDEDAYAGGDSVVVDTDTNEIVAHFQYEEGALVTAVAGQHAGDIGEIAEINVQPGSASNTVRVDDENG 211
BLAST of CF835375 vs. ExPASy Swiss-Prot
Match: RS4E_NATPD (30S ribosomal protein S4e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4e PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.196e-18 Identity = 57/201 (28.36%), Postives = 99/201 (49.25%), Query Frame = 3 Query: 66 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPD-PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 665 + H KRL PK W +++ A+ K ++GPH E +PL++VLR+ L Y + +E L Q +L++G +D+ P G D+++ + E +R+ D GR L + ++ A KL K+ G ++ +DG T+ D ND+I + + +I ++ G +V G + GR+G I + GS Sbjct: 1 MTNHQKRLAVPKSWPVERKEEAYTTKAAAGPH-GEEGVPLLIVLRDVLGYVDSKKEARYALEQDSILINGTAVSDERRPVGMFDILAFDEREEYYRIFPDEGGRLSLTPIDEDAAGSKLGKIVGKTQVAGGDTQLSLHDGETLLVEDATAYDTNDSIVVSNDGEEIVAHFTYEEGALVTAVSGAHAGRIGTIDEIQVTPGS 200 The following BLAST results are available for this feature:
BLAST of CF835375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835375 ID=CF835375; Name=CF835375; organism=Citrus sinensis; type=EST; length=737bpback to top |