CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:941..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: HXT16_YEAST (Hexose transporter HXT16 OS=Saccharomyces cerevisiae GN=HXT16 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 54/205 (26.34%), Postives = 90/205 (43.90%), Query Frame = -3
Query:  276 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFL-VSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIV---CAFTV-AFVSLWVPETKGRSLEEIQFSF 875
            GI +    QL+G N   FY + IF + G++     +  LG V   +T +   ++DK GRR       + M A   +  SI         +D       G   +V     +  F+     + +++++E  P  +KS A S++T  NWL  +++     F   + +G     YG V   C   +  +V  ++PET G SLEE Q  +
Sbjct:  324 GILVQTFLQLTGENYFFFYGTTIFKSVGLTDGFETSIVLGTVNFFSTIIAVMVVDKIGRRKCLLFGAASMMACMVIFASIGVKCLYPHGQDGPSSKGAGNAMIVFTCFYIFCFATTWAPVAYIVVAESFPSKVKSKAMSISTAFNWLWQFLI----GFFTPFITGSIHFYYGYVFVGCLVAMFLYVFFFLPETIGLSLEETQLLY 524          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GHT7_SCHPO (Probable high-affinity hexose transporter ght7 OS=Schizosaccharomyces pombe GN=ght7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 54/204 (26.47%), Postives = 91/204 (44.61%), Query Frame = -3
Query:  267 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFT-VAFVSLWVPETKGRSLEEIQFSFR*N 875
            G+ +++ QQL+G N   +Y + +F   G+ S  +A      V    T    ++++  GRR             FF+ + A        ++       G + +V     + SFS       +VI+ E  PV  +S   +VAT ANW  +++++    F+ + S G  +      C  T  A + L+V ETKGR+LEEI   +  N
Sbjct:  239 GMAVMMFQQLTGANYYFYYGTQVFRGTGMDSPYLAALIPDAVNCGCTFGAIFVLEFFGRRSPLIVGGIWQYICFFIYA-AVGDRALYHKNGTSNHRAGAVMIVFSCLFIFSFSQTWAPAAYVIVGESYPVRYRSKCAAVATSANWFWNFLISFFTPFITN-SIGFKYGYIFASCNLTGAAIIFLFVHETKGRTLEEINTMYASN 440          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GHT3_SCHPO (High-affinity gluconate transporter ght3 OS=Schizosaccharomyces pombe GN=ght3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.313e-11
Identity = 50/202 (24.75%), Postives = 88/202 (43.56%), Query Frame = -3
Query:  288 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSI------LGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEI 875
            G  +++ ++L G N   +Y++ +F   G++   +    LG +    T    + +D  GRR           A+F   SI FF+   V +    Y         G + +V     + S+    G + WVI+ E  P+  +S   SVAT  NWL +++++    F+ +        IY  +  F+   +     ETKG +LEE+
Sbjct:  269 GFLVMLFRELIGNNYYFYYATQVFKGTGMTDIFLPAVILGAINFGTTFGALYTIDNLGRRNPLI-----FGAAF--QSICFFIYAAVGDRKLIYKNGTSDHRAGSVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCASVATSGNWLGNFMISFFTPFINNAIGFKLGYIYACINLFSSFMIFFLAKETKGLTLEEV 463          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
HXT16_YEAST9.313e-1126.34Hexose transporter HXT16 OS=Saccharomyces cerevisi... [more]
GHT7_SCHPO9.313e-1126.47Probable high-affinity hexose transporter ght7 OS=... [more]
GHT3_SCHPO9.313e-1124.75High-affinity gluconate transporter ght3 OS=Schizo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
back to top