CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:941..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.098e-27
Identity = 71/215 (33.02%), Postives = 113/215 (52.56%), Query Frame = -3
Query:  276 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAF--------------FLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 875
            GI L+V QQLSG+N ++FY++ IF  A    S++A+  +G++QV+ T V   +MD+AGR+         M  S       F               L    +E +  +  L  L++  +   +  F++G G IPW++MSEI P++IK +A  V  L NW ++++VT   N +++     G F +    C  +V F   +VPETKGR+LE+I   F
Sbjct:  261 GICLMVFQQLSGVNAIMFYANTIFEEAKFKDSSLASVTVGIIQVLFTAVAALIMDRAGRKLLLALSGVIMVFSMSAFGTYFKLTQSGPSNSSHVGLLVPISAEPADVHLGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHIKGVATGVCVLTNWFMAFLVTKEFNSIMEILRPYGAFWLTAAFCILSVLFTLTFVPETKGRTLEQITAHF 475          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR8_HUMAN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 9.270e-27
Identity = 72/215 (33.49%), Postives = 112/215 (52.09%), Query Frame = -3
Query:  276 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSI--------------LGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 875
            G+ L+  QQLSG+N V+FY+  IF  A    S++A+  +GV+QV+ T V   +MD+AGRR         M  S       F L      +S   +I              L  L++  +   +  F++G G IPW++MSEI P+++K +A  +  L NWL++++VT   + L++     G F +    C F+V F    VPETKG++LE+I   F
Sbjct:  260 GVSLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTAVAALIMDRAGRRLLLVLSGVVMVFSTSAFGAYFKLTQGGPGNSSHVAISAPVSAQPVDASVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHF 474          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR2_CHICK (Solute carrier family 2, facilitated glucose transporter member 2 OS=Gallus gallus GN=SLC2A2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.270e-27
Identity = 68/196 (34.69%), Postives = 107/196 (54.59%), Query Frame = -3
Query:  273 VLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 860
            + QQ SGIN + +YS+NIF  AG+     AT G+GVV  V T ++ +L++KAGRR        GM  S   +++   L   +S+    ++ +  +S+V +   VI F +G G IPW I++E+     +  A +VA   NW  ++IV M   ++ D      F+++ ++      F  L VPETKG+S EEI  +FR
Sbjct:  324 ISQQFSGINAIFYYSTNIFQRAGVGQPVYATIGVGVVNTVFTVISVFLVEKAGRRSLFLAGLMGMLISAVAMTVGLVL---LSQ----FAWMSYVSMVAIFLFVIFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFCNWACNFIVGMCFQYIADLCGPYVFVVFAVLLLVFFLFAYLKVPETKGKSFEEIAAAFR 512          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR2_HUMAN (Solute carrier family 2, facilitated glucose transporter member 2 OS=Homo sapiens GN=SLC2A2 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.581e-26
Identity = 70/199 (35.18%), Postives = 109/199 (54.77%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY-GIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L V QQ SGING+ +YS++IF  AGIS    AT G+G V +V T V+ +L++KAGRR       SGM      +S+   L          +S +  +S++ +   V  F +G G IPW +++E      +  A ++A  +NW  ++IV +   ++ D+     F ++ G++ AFT+ F    VPETKG+S EEI   F+
Sbjct:  310 LHVAQQFSGINGIFYYSTSIFQTAGISKPVYATIGVGAVNMVFTAVSVFLVEKAGRRSLFLIGMSGMFVCAIFMSVGLVL-------LNKFSWMSYVSMIAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPAALAIAAFSNWTCNFIVALCFQYIADFCGPYVFFLFAGVLLAFTL-FTFFKVPETKGKSFEEIAAEFQ 500          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR8_BOVIN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Bos taurus GN=SLC2A8 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.523e-26
Identity = 73/215 (33.95%), Postives = 111/215 (51.63%), Query Frame = -3
Query:  276 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSL------VGLVTVVI--------SFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 875
            GI L+  QQLSG+N V+FY+  IF  A    S++A+  +GV+QV+ T     +MD+AGRR         M  S       F L      +S    +  ++S+      VGL  + +         F++G G IPW++MSEI P+++K +A  V  L NW ++++VT   + L++     G F +    C F V F    VPETKG++LE+I   F
Sbjct:  261 GISLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFTATAALIMDRAGRRLLLTLSGVVMVFSTSAFGTYFKLTEGGPSNSSHVDLPALVSMEAADTNVGLAWLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGVCVLTNWFMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFGVLFTLACVPETKGKTLEQITAHF 475          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_CHICK (Solute carrier family 2, facilitated glucose transporter member 1 OS=Gallus gallus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.339e-25
Identity = 70/200 (35.00%), Postives = 108/200 (54.00%), Query Frame = -3
Query:  273 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 872
            I L + QQLSGIN V +YS++IF  +G+     AT G GVV    T V+ +++++AGRR       +GMA    L++IA  L     +   + S L I+++ G V     F +G G IPW I++E+     +  A +VA L+NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI + FR
Sbjct:  275 IVLQLSQQLSGINAVFYYSTSIFEKSGVEQPVYATIGSGVVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALTL----LDQMPWMSYLSIVAIFGFVAF---FEIGPGPIPWFIVAELFSQGPRPAAFAVAGLSNWTSNFIVGMGFQYIAQLCGSYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIAYRFR 467          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.895e-25
Identity = 69/200 (34.50%), Postives = 115/200 (57.50%), Query Frame = -3
Query:  279 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTM-TANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFS 875
            G  L + QQL+GIN V++YS+++F +AGI S   A+  +G   V  T V + LMDK GR+        GMA S  L+S++F  +   +     YS  G L++VG V  V+SFSLG G +P +++ EI    I++ A +++   +W+ ++++ +   + +  +     +L +  VC   V +++  V ETKGRSLEEI+ +
Sbjct:  349 GAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLLLSLSFTWKALAA-----YS--GTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELA 541          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR4_MOUSE (Solute carrier family 2, facilitated glucose transporter member 4 OS=Mus musculus GN=Slc2a4 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 5.086e-25
Identity = 68/198 (34.34%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF +AG+     AT G GVV  V T V+  L+++AGRR       +GM     L+++A  L   V         +  +S+V +   V  F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++ D      FL++ ++      F  L VPET+GR+ ++I  +FR
Sbjct:  294 LQLSQQLSGINAVFYYSTSIFESAGVGQPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPA-------MSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLKVPETRGRTFDQISAAFR 484          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR2_MOUSE (Solute carrier family 2, facilitated glucose transporter member 2 OS=Mus musculus GN=Slc2a2 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 5.086e-25
Identity = 68/199 (34.17%), Postives = 109/199 (54.77%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY-GIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQ SGING+ +YS++IF  AGIS    AT G+G + ++ T V+  L++KAGRR       +GM   FF     F   G V  D   ++ +  +S+  +   V  F +G G IPW +++E      +  A ++A  +NW+ ++++ +   ++ D+     F ++ G+V  FT+ F    VPETKG+S EEI   FR
Sbjct:  309 LHMAQQFSGINGIFYYSTSIFQTAGISQPVYATIGVGAINMIFTAVSVLLVEKAGRR---TLFLTGMIGMFFCT--IFMSVGLVLLDK--FAWMSYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPTALALAAFSNWVCNFVIALCFQYIADFLGPYVFFLFAGVVLVFTL-FTFFKVPETKGKSFEEIAAEFR 499          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR2_RAT (Solute carrier family 2, facilitated glucose transporter member 2 OS=Rattus norvegicus GN=Slc2a2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.676e-25
Identity = 68/199 (34.17%), Postives = 109/199 (54.77%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY-GIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQ SGING+ +YS++IF  AGIS    AT G+G + ++ T V+  L++KAGRR       +GM   FF     F   G V  D   ++ +  +S+  +   V  F +G G IPW +++E      +  A ++A  +NW+ ++I+ +   ++ D+     F ++ G+V  FT+ F    VPETKG+S +EI   FR
Sbjct:  308 LHLAQQFSGINGIFYYSTSIFQTAGISQPVYATIGVGAINMIFTAVSVLLVEKAGRR---TLFLAGMIGMFFCA--VFMSLGLVLLDK--FTWMSYVSMTAIFLFVSFFEIGPGPIPWFMVAEFFSQGPRPTALALAAFSNWVCNFIIALCFQYIADFLGPYVFFLFAGVVLVFTL-FTFFKVPETKGKSFDEIAAEFR 498          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
GTR8_RAT7.098e-2733.02Solute carrier family 2, facilitated glucose trans... [more]
GTR8_HUMAN9.270e-2733.49Solute carrier family 2, facilitated glucose trans... [more]
GTR2_CHICK9.270e-2734.69Solute carrier family 2, facilitated glucose trans... [more]
GTR2_HUMAN1.581e-2635.18Solute carrier family 2, facilitated glucose trans... [more]
GTR8_BOVIN3.523e-2633.95Solute carrier family 2, facilitated glucose trans... [more]
GTR1_CHICK1.339e-2535.00Solute carrier family 2, facilitated glucose trans... [more]
PLST4_ARATH3.895e-2534.50Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]
GTR4_MOUSE5.086e-2534.34Solute carrier family 2, facilitated glucose trans... [more]
GTR2_MOUSE5.086e-2534.17Solute carrier family 2, facilitated glucose trans... [more]
GTR2_RAT8.676e-2534.17Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
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