CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:941..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_RABIT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Oryctolagus cuniculus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.676e-25
Identity = 70/198 (35.35%), Postives = 106/198 (53.54%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G G+V    T V+ +++++AGRR       +GMAA   L++IA  L     E   + S L I+++ G V     F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI   FR
Sbjct:  278 LQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAACAVLMTIALAL----LEQLPWMSYLSIVAIFGFVAF---FEVGPGPIPWFIVAELFSQGPRPAAVAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFR 468          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR4_RAT (Solute carrier family 2, facilitated glucose transporter member 4 OS=Rattus norvegicus GN=Slc2a4 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.133e-24
Identity = 68/198 (34.34%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G GVV  V T V+  L+++AGRR       +GM     L+++A  L   V         +  +S+V +   V  F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++ D      FL++ ++      F  L VPET+GR+ ++I  +FR
Sbjct:  294 LQLSQQLSGINAVFYYSTSIFELAGVEQPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERVPS-------MSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIVGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLRVPETRGRTFDQISATFR 484          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.933e-24
Identity = 63/201 (31.34%), Postives = 105/201 (52.24%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFG---LGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWS-SGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            G GL   QQ +GIN V++YS  I   AG  S+ +A F    +  +    T V  + +D  GR+        G+  S  ++S++FF +   S D   Y   G L+++GL   ++ F+ G+G +PW + SEI P   + + G ++   NW+ + IV  T   + + + +G TFLI   +    V FV ++VPET+G +  E++
Sbjct:  279 GAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLY---GWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVE 476          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR4_BOVIN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Bos taurus GN=SLC2A4 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.933e-24
Identity = 67/199 (33.67%), Postives = 106/199 (53.27%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L + QQLSGIN V +YS++IF +AG+     AT G GVV  V T V+ +L+++AGRR       +GM     L+++A  L   V         +  +S+V +   V  F +G G IPW I++E+     +  A +VA  +NW  ++I+ M   ++ D      FL++ ++      F  L VPET+GR+ ++I   F
Sbjct:  292 IVLQLSQQLSGINAVFYYSTSIFESAGVEKPAYATIGAGVVNTVFTLVSVFLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERV-------PAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTCNFIIGMGFQYVADAMGPYVFLLFAVLLLGFFIFTFLKVPETRGRTFDQISAVF 483          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR3_RAT (Solute carrier family 2, facilitated glucose transporter member 3 OS=Rattus norvegicus GN=Slc2a3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.524e-24
Identity = 65/197 (32.99%), Postives = 102/197 (51.78%), Query Frame = -3
Query:  276 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 866
            L + QQ SGIN V +YS+ IF +AG+     AT G GVV  + T V+ +L+++AGRR        GMA     ++I+  L+         Y  +  + +V ++  V  F +G G IPW I++E+     +  A +VA  +NW  +++V M       +     F+I+     F + F S  VPETKGR+ E+I  +F
Sbjct:  276 LQLSQQFSGINAVFYYSTGIFQDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMTISLLLKDE-------YEAMSFVCIVAILVYVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGMFFPSAAAYLGAYVFIIFAAFLVFFLIFTSFKVPETKGRTFEDITRAF 465          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_RAT (Solute carrier family 2, facilitated glucose transporter member 1 OS=Rattus norvegicus GN=Slc2a1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.524e-24
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G G+V    T V+ +++++AGRR       +GMA    L++IA  L     E   + S L I+++ G V     F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI   FR
Sbjct:  278 LQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALAL----LEQLPWMSYLSIVAIFGFVAF---FEVGPGPIPWFIVAELFSQGPRPAAVAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFR 468          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_HUMAN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Homo sapiens GN=SLC2A1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.524e-24
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G G+V    T V+ +++++AGRR       +GMA    L++IA  L     E   + S L I+++ G V     F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI   FR
Sbjct:  278 LQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAILMTIALAL----LEQLPWMSYLSIVAIFGFVAF---FEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFR 468          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_SHEEP (Solute carrier family 2, facilitated glucose transporter member 1 (Fragment) OS=Ovis aries GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.297e-24
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G G+V    T V+ +++++AGRR       +GMA    L++IA  L     E   + S L I+++ G V     F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI   FR
Sbjct:  176 LQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALAL----LEQLPWMSYLSIVAIFGFVAF---FEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFR 366          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_PIG (Solute carrier family 2, facilitated glucose transporter member 1 (Fragment) OS=Sus scrofa GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.297e-24
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G G+V    T V+ +++++AGRR       +GMA    L++IA  L     E   + S L I+++ G V     F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI   FR
Sbjct:  237 LQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALAL----LEQLPWMSYLSIVAIFGFVAF---FEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFR 427          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR3_MOUSE (Solute carrier family 2, facilitated glucose transporter member 3 OS=Mus musculus GN=Slc2a3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.624e-24
Identity = 67/199 (33.67%), Postives = 104/199 (52.26%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L + QQLSGIN V +YS+ IF +AG+     AT G GVV  + T V+ +L+++AGRR        GMA     ++I+  L+    +D   Y  +  + +V ++  V  F +G G IPW I++E+     +  A +VA   NW  +++V M       +     F+I+     F + F    VPETKGR+ E+I  +F
Sbjct:  274 IVLQLSQQLSGINAVFYYSTGIFKDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMTISLLLK----DD---YEAMSFVCIVAILIYVAFFEIGPGPIPWFIVAELFSQGPRPAAIAVAGCCNWTSNFLVGMLFPSAAAYLGAYVFIIFAAFLIFFLIFTFFKVPETKGRTFEDIARAF 465          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
GTR1_RABIT8.676e-2535.35Solute carrier family 2, facilitated glucose trans... [more]
GTR4_RAT1.133e-2434.34Solute carrier family 2, facilitated glucose trans... [more]
INT1_ARATH1.933e-2431.34Probable inositol transporter 1 OS=Arabidopsis tha... [more]
GTR4_BOVIN1.933e-2433.67Solute carrier family 2, facilitated glucose trans... [more]
GTR3_RAT2.524e-2432.99Solute carrier family 2, facilitated glucose trans... [more]
GTR1_RAT2.524e-2434.85Solute carrier family 2, facilitated glucose trans... [more]
GTR1_HUMAN2.524e-2434.85Solute carrier family 2, facilitated glucose trans... [more]
GTR1_SHEEP3.297e-2434.85Solute carrier family 2, facilitated glucose trans... [more]
GTR1_PIG3.297e-2434.85Solute carrier family 2, facilitated glucose trans... [more]
GTR3_MOUSE5.624e-2433.67Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
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