CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:941..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_MOUSE (Solute carrier family 2, facilitated glucose transporter member 1 OS=Mus musculus GN=Slc2a1 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 5.624e-24
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G G+V    T V+ +++++AGRR       +GMA    L++IA  L     E   + S L I+++ G V     F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI   FR
Sbjct:  278 LQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALAL----LERLPWMSYLSIVAIFGFVAF---FEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFR 468          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_BOVIN (Solute carrier family 2, facilitated glucose transporter member 1 OS=Bos taurus GN=SLC2A1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.624e-24
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = -3
Query:  273 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 866
            L + QQLSGIN V +YS++IF  AG+     AT G G+V    T V+ +++++AGRR       +GMA    L++IA  L     E   + S L I+++ G V     F +G G IPW I++E+     +  A +VA  +NW  ++IV M   ++        F+I+ ++      F    VPETKGR+ +EI   FR
Sbjct:  278 LQLSQQLSGINAVFYYSTSIFEKAGVQQPVYATIGSGIVNTAFTVVSLFVVERAGRRTLHLIGLAGMAGCAVLMTIALAL----LERLPWMSYLSIVAIFGFVAF---FEVGPGPIPWFIVAELFSQGPRPAAIAVAGFSNWTSNFIVGMCFQYVEQLCGPYVFIIFTVLLVLFFIFTYFKVPETKGRTFDEIASGFR 468          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: PLST3_ARATH (Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 9.593e-24
Identity = 73/201 (36.32%), Postives = 114/201 (56.72%), Query Frame = -3
Query:  279 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFL--IYGIVCAFTVAFVSLWVPETKGRSLEEIQFS 875
            G  L  LQQLSGIN V ++SS +F  AG+ S++ A   +GV  ++ + V   LMDK GR+       +GMA S  L +IA+      S  S F ++   LS+ G++  V+SF+ G G +P +++SEI P  +++ A +V    +W++++ V +    +L+   G   L  I+G  C   V FV   V ETKG+SL+EI+ S
Sbjct:  298 GSTLFALQQLSGINAVFYFSSTVFKKAGVPSAS-ANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAY-----TSLPSPFGTLF--LSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLE-QLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEIS 489          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR4_HUMAN (Solute carrier family 2, facilitated glucose transporter member 4 OS=Homo sapiens GN=SLC2A4 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.253e-23
Identity = 65/197 (32.99%), Postives = 104/197 (52.79%), Query Frame = -3
Query:  276 LLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 866
            L + QQLSGIN V +YS++IF  AG+     AT G GVV  V T V+  L+++AGRR       +GM     L+++A  L   V         +  +S+V +   V  F +G G IPW I++E+     +  A +VA  +NW  ++I+ M   ++ +      FL++ ++      F  L VPET+GR+ ++I  +F
Sbjct:  294 LQLSQQLSGINAVFYYSTSIFETAGVGQPAYATIGAGVVNTVFTLVSVLLVERAGRRTLHLLGLAGMCGCAILMTVALLLLERV-------PAMSYVSIVAIFGFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGFSNWTSNFIIGMGFQYVAEAMGPYVFLLFAVLLLGFFIFTFLRVPETRGRTFDQISAAF 483          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR3_CHICK (Solute carrier family 2, facilitated glucose transporter member 3 OS=Gallus gallus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.218e-23
Identity = 71/199 (35.68%), Postives = 102/199 (51.26%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L + QQLSGIN V +YS+ IF  AGI+    AT G GVV  V T V+ +L+++AGRR        GMA    +++IA  L+    +  R+ SI+     V L      F +G G IPW I++E+     +  A +VA  +NW  +++V M   +         FLI+ +       F    VPETKGR+ E+I   F
Sbjct:  275 ITLQLSQQLSGINAVFYYSTGIFERAGITQPVYATIGAGVVNTVFTVVSLFLVERAGRRTLHLVGLGGMAVCAAVMTIALALK---EKWIRYISIVATFGFVAL------FEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGMLFPYAEKLCGPYVFLIFLVFLLIFFIFTYFKVPETKGRTFEDISRGF 464          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR3_BOVIN (Solute carrier family 2, facilitated glucose transporter member 3 OS=Bos taurus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.218e-23
Identity = 73/207 (35.27%), Postives = 107/207 (51.69%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFL--LDWSSGGTFLIYGIVCAFTVAFVSLW------VPETKGRSLEEIQFSF 872
            I L + QQLSGIN V +YS+ IF +AG+     AT G GVV  + T V+ +L+++AGRR        GMA    L++I+  L+         YS +  + +  ++  V  F +G G IPW I++E+     +  A +VA  +NW        T+NFL  L + S   +L   +   FTV  V  W      VPET+GR+ EEI  +F
Sbjct:  274 IMLQLSQQLSGINAVFYYSTGIFKDAGVQEPVYATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKD-------NYSWMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNW--------TSNFLVGLLFPSAAFYLGAYVFIVFTVFLVIFWVFTFFKVPETRGRTFEEITRAF 465          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR3_SHEEP (Solute carrier family 2, facilitated glucose transporter member 3 OS=Ovis aries GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.121e-23
Identity = 64/199 (32.16%), Postives = 103/199 (51.76%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L + QQLSGIN V +YS+ IF +AG+     AT G GVV  + T V+ +L+++AGRR        GMA    L++I+  L+         YS +  + +  ++  V  F +G G IPW I++E+     +  A +VA  +NW  +++V +       +     F+++ +       F    VPET+GR+ EEI  +F
Sbjct:  274 IMLQLSQQLSGINAVFYYSTGIFKDAGVQEPVYATIGAGVVNTIFTVVSVFLVERAGRRTLHLIGLGGMAFCSILMTISLLLKD-------NYSWMSFICIGAILVFVAFFEIGPGPIPWFIVAELFGQGPRPAAMAVAGCSNWTSNFLVGLLFPSATFYLGAYVFIVFTVFLVIFWVFTFFKVPETRGRTFEEITRAF 465          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR3_CANFA (Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.363e-22
Identity = 67/200 (33.50%), Postives = 106/200 (53.00%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIY-GIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            I L + QQLSGIN V +YS+ IF +AG+     AT G GVV  + T V+ +L+++AGRR        GMA    L++I+  L+         Y+ +  + +  ++  V  F +G G IPW I++E+     +  A +VA  +NW  +++V +       +     F+I+ G +  F V F    VPET+GR+ EEI  +F
Sbjct:  274 IMLQLSQQLSGINAVFYYSTGIFKDAGVEEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKD-------NYNWMSFVCIGAILVFVAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAFYLGAYVFIIFTGFLIVFLV-FTFFKVPETRGRTFEEITRAF 465          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR1_LEIDO (Membrane transporter D1 OS=Leishmania donovani PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.363e-22
Identity = 71/204 (34.80%), Postives = 107/204 (52.45%), Query Frame = -3
Query:  273 GLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSI-AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 869
            GL ++QQ SGIN +++YSS I  +AG   +    V +  L  +  + T V  + +D+ GRR        G      +++I  FF+   +S     YS+ G L L  L   +  ++ G+G IPWVIM EI P ++++ A SVAT+ANW  + +V+     L+     GGTF I   + A    FV  +  ETKG +LE+I   FR
Sbjct:  245 GLQIIQQFSGINTIMYYSSVILYDAGFRDAIMPVVLSIPLAFMNALFTAVAIFTVDRFGRRRMLLISVFGCLVLLVVIAIIGFFIGTRIS-----YSVGGGLFLALLAVFLALYAPGIGCIPWVIMGEIFPTHLRTSAASVATMANWGANVLVSQVFPILMGAIGVGGTFTIISGLMALGCIFVYFFAVETKGLTLEQIDNMFR 443          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.086e-22
Identity = 65/201 (32.34%), Postives = 113/201 (56.22%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVAT---FGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGG-TFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            G GL++ QQ++G   VL+Y+ +I   AG S++  AT     LG+++++ TGV   ++D+ GRR        GM  S FL+  +++L         F+S   ++++V L+  V  + L  G I W+++SEI P+ ++    S+A L N+  + +VT   + L +    G  F  +G++C  ++ F+   VPETKG +LEEI+
Sbjct:  309 GGGLVLFQQITGQPSVLYYAPSILQTAGFSAAGDATRVSILLGLLKLIMTGVAVVVIDRLGRRPLLLGGVGGMVVSLFLLG-SYYL---------FFSASPVVAVVALLLYVGCYQLSFGPIGWLMISEIFPLKLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFCGFGVICVLSLVFIFFIVPETKGLTLEEIE 499          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
GTR1_MOUSE5.624e-2434.85Solute carrier family 2, facilitated glucose trans... [more]
GTR1_BOVIN5.624e-2434.85Solute carrier family 2, facilitated glucose trans... [more]
PLST3_ARATH9.593e-2436.32Probable plastidic glucose transporter 3 OS=Arabid... [more]
GTR4_HUMAN1.253e-2332.99Solute carrier family 2, facilitated glucose trans... [more]
GTR3_CHICK6.218e-2335.68Solute carrier family 2, facilitated glucose trans... [more]
GTR3_BOVIN6.218e-2335.27Solute carrier family 2, facilitated glucose trans... [more]
GTR3_SHEEP8.121e-2332.16Solute carrier family 2, facilitated glucose trans... [more]
GTR3_CANFA2.363e-2233.50Solute carrier family 2, facilitated glucose trans... [more]
GTR1_LEIDO2.363e-2234.80Membrane transporter D1 OS=Leishmania donovani PE=... [more]
XYLL2_ARATH3.086e-2232.34D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
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