CF835376

Overview
NameCF835376
Unique NameCF835376
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:941..1817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: IOLT_BACSU (Major myo-inositol transporter iolT OS=Bacillus subtilis GN=iolT PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.693e-20
Identity = 61/206 (29.61%), Postives = 108/206 (52.43%), Query Frame = -3
Query:  273 GIGLLVLQQLSGINGVLFYSSNIFANAGI--SSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSI-AFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLG-VGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL-DWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 875
            G+G+ ++QQ++G+N +++Y + I  N+G    ++ +     GV+ V+AT V  WL+ + GRR        G   +  L+ I +  LEG     +  Y +L       L    ++F  G +  + W+++SEI P+ ++ L   V     W+V++ V+ T   LL       TF I+  +   +V FV  ++PETKG SLE+++ +FR
Sbjct:  260 GLGIAIVQQITGVNSIMYYGTEILRNSGFQTEAALIGNIANGVISVLATFVGIWLLGRVGRRPMLMTGLIGTTTALLLIGIFSLVLEG---SPALPYVVL------SLTVTFLAFQQGAISPVTWLMLSEIFPLRLRGLGMGVTVFCLWMVNFAVSFTFPILLAAIGLSTTFFIFVGLGICSVLFVKRFLPETKGLSLEQLEENFR 456          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: XYLE_ECOLI (D-xylose-proton symporter OS=Escherichia coli (strain K12) GN=xylE PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 61/206 (29.61%), Postives = 108/206 (52.43%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT-------ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            G+ L + QQ  GIN VL+Y+  +F   G S+  + + T  +GV+ +  T +    +DK GR+        GMA   F +  AF+ +             GI++L+ ++  V +F++  G + WV++SEI P  I+  A ++A  A WL ++ V+ T       +  +  + +G ++ IYG +      F+  +VPETKG++LEE++
Sbjct:  281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: XYLE_ECO57 (D-xylose-proton symporter OS=Escherichia coli O157:H7 GN=xylE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 61/206 (29.61%), Postives = 108/206 (52.43%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISS--SNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT-------ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            G+ L + QQ  GIN VL+Y+  +F   G S+  + + T  +GV+ +  T +    +DK GR+        GMA   F +  AF+ +             GI++L+ ++  V +F++  G + WV++SEI P  I+  A ++A  A WL ++ V+ T       +  +  + +G ++ IYG +      F+  +VPETKG++LEE++
Sbjct:  281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-----------PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELE 475          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GLF_ZYMMO (Glucose facilitated diffusion protein OS=Zymomonas mobilis GN=glf PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.888e-20
Identity = 61/214 (28.50%), Postives = 106/214 (49.53%), Query Frame = -3
Query:  273 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLL-----------DWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 875
            G+ +   QQL GIN VL+Y+  +F N G  +    + T  +GVV  + T + + ++D+ GR+        GMAA   ++   F+           + + G+L L  ++  +  F +  G + WV++SE+ P +IK  A  +A    WL + +V    NFL             ++ G ++L++  +       V+ +VPETKGRSL+EI+  +R
Sbjct:  272 GVSVAAFQQLVGINAVLYYAPQMFQNLGFGADTALLQTISIGVVNFIFTMIASRVVDRFGRKPLLIWGALGMAAMMAVLGCCFW-----------FKVGGVLPLASVLLYIAVFGMSWGPVCWVVLSEMFPSSIKGAAMPIAVTGQWLANILV----NFLFKVADGSPALNQTFNHGFSYLVFAALSILGGLIVARFVPETKGRSLDEIEEMWR 470          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: GTR7_MOUSE (Solute carrier family 2, facilitated glucose transporter member 7 OS=Mus musculus GN=Slc2a7 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.434e-20
Identity = 59/199 (29.65%), Postives = 109/199 (54.77%), Query Frame = -3
Query:  276 LLVLQQLSGINGVLFYSSNIFANAGI--SSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 866
            L+  QQLSGIN V +Y+  I+ +AG+  + S   T G GV+ +V T V+  ++++ GRR       +   ++  ++++A  L+    E       L  LS+V + + ++  S+G   +P V+ +EI+  + ++ A +V    +WL ++IV +T   +       +FL++  VC  T A++ + +PETKGR+  EI  +F
Sbjct:  291 LMAGQQLSGINAVNYYADVIYTSAGVDPTQSQYVTLGSGVINLVMTLVSAVIIERLGRRILLLSGYAICCSACLVLTVALLLQSTAPE-------LSYLSIVCVFSYIVGHSIGPSPVPSVVRTEIVLQSSRTAAFTVDGAVHWLTNFIVGLTFPSIQVAIGAYSFLVFAGVCILTAAYIYVVIPETKGRTFVEINCAF 482          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 65/204 (31.86%), Postives = 104/204 (50.98%), Query Frame = -3
Query:  273 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSFR 872
            +G+   Q  SGI  VL Y   IF  AGI++ +   + T G+G+++       T L+DK GRR        GM  +  L  + F L    +   +    L +LS+V   + V  FS+G+G I WV  SE+ P+ +++   S+    N +++  V+M+   L    ++GG F ++  V A    F    +PETKG+SLEEI+  F+
Sbjct:  280 LGIHFFQHASGIEAVLLYGPRIFKKAGITTKDKLFLVTIGVGIMKTTFIFTATLLLDKVGRRKLLLTSVGGMVIA--LTMLGFGLTMAQNAGGKLAWAL-VLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRVMNATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFFFLLPETKGKSLEEIEALFQ 480          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 59/204 (28.92%), Postives = 96/204 (47.06%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSED------SRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT-ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            G GL  +QQ +G N ++++S  IF   G  +S+  +  +     + T V  + +DK GRR        GM  +  + SIAF   G   +       S  +S  GI+ +V ++     ++LG+G +PW   SE+ P N++ +  S AT  NW  S ++  T    L + +  GTF  +  +   +  F     PE  G  LEE+Q
Sbjct:  341 GCGLQAIQQFTGWNSLMYFSGTIFETVGFKNSSAVSIIVSGTNFIFTLVAFFSIDKIGRRTILLIGLPGMTMALVVCSIAFHFLGIKFDGAVAVVVSSGFSSWGIVIIVFIIVFAAFYALGIGTVPWQ-QSELFPQNVRGIGTSYATATNWAGSLVIASTFLTMLQNITPAGTFAFFAGLSCLSTIFCYFCYPELSGLELEEVQ 543          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: ARAE_BACSU (Arabinose-proton symporter OS=Bacillus subtilis GN=araE PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 60/200 (30.00%), Postives = 101/200 (50.50%), Query Frame = -3
Query:  285 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSN--VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLD-WSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQ 875
            GI L +  Q+ G+N + +Y   IF   G   +   V T  +GVV+V+ T +   L+DK GR+       + MA    L+  +F+ E             GI+ +V ++  V +F + VG I W+++SEI P ++++ A  +AT+  W  +W +      ++D +    TF I+ ++      FV    PETK +SLEEI+
Sbjct:  270 GILLALFNQVIGMNAITYYGPEIFKMMGFGQNAGFVTTCIVGVVEVIFTVIAVLLIDKVGRKKLMSIGSAFMAIFMILIGTSFYFE----------LTSGIMMIVLILGFVAAFCVSVGPITWIMISEIFPNHLRARAAGIATIFLWGANWAIGQFVPMMIDSFGLAYTFWIFAVINILCFLFVVTICPETKNKSLEEIE 459          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 58/203 (28.57%), Postives = 106/203 (52.22%), Query Frame = -3
Query:  276 IGLLVLQQLSGINGVLFYSSNIFANAGISSSN---VATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMT-ANFLLDWSSGGTFLIYGIVCAFTVAFVSLWVPETKGRSLEEIQFSF 872
            IG+   QQ SGI+ V+ +S  IF  AG+ + +   +AT  +GVV+     V T+L+D+ GRR        GM  S   +  +  +   + +  +      ++++  ++T V +FS+G G I WV  SEI P+ ++S   S+  + N + S +++++        ++GG F ++G +      F   ++PET+GR LE++   F
Sbjct:  299 IGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQQLLATVAVGVVKTSFILVATFLLDRIGRRPLLLTSVGGMVLSLAALGTSLTI---IDQSEKKVMWAVVVAIATVMTYVATFSIGAGPITWVYSSEIFPLRLRSQGSSMGVVVNRVTSGVISISFLPMSKAMTTGGAFYLFGGIATVAWVFFYTFLPETQGRMLEDMDELF 498          
BLAST of CF835376 vs. ExPASy Swiss-Prot
Match: PLST2_ARATH (Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 68/202 (33.66%), Postives = 107/202 (52.97%), Query Frame = -3
Query:  279 GIGLLVLQQLSGINGVLFYSSNIFANAGISSSNVATFGLGVVQVVATGVNTWLMDKAGRRXXXXXXXSGMAASFFLVSIAFFLEGFVSEDSRFYSILGILSLVGLVTVVISFSLGVGAIPWVIMSEILPVNIKSLAGSVATLANWLVSWIVTMTANFLLDWSSGGTFLIYGI---VCAFTVAFVSLWVPETKGRSLEEIQFS 875
            G  L  LQQLSGIN V ++SS +F +AG+ S ++    +GV  ++ + +   LMDK GR+        GMAA+  L        G  S     +S L  LS+ G +  V++F+LG G +P +++ EI P  I++ A +     +W++++ V +   FL      G  L+Y +    C   V FV   V ETKG++L+EI+ S
Sbjct:  297 GSTLFALQQLSGINAVFYFSSTVFKSAGVPS-DLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLWSFIGMAAAMALQV------GATSSYLPHFSAL-CLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRIRAKAMAFCMSVHWVINFFVGLL--FLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGKTLQEIEIS 488          
The following BLAST results are available for this feature:
BLAST of CF835376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
IOLT_BACSU1.693e-2029.61Major myo-inositol transporter iolT OS=Bacillus su... [more]
XYLE_ECOLI2.211e-2029.61D-xylose-proton symporter OS=Escherichia coli (str... [more]
XYLE_ECO572.211e-2029.61D-xylose-proton symporter OS=Escherichia coli O157... [more]
GLF_ZYMMO2.888e-2028.50Glucose facilitated diffusion protein OS=Zymomonas... [more]
GTR7_MOUSE6.434e-2029.65Solute carrier family 2, facilitated glucose trans... [more]
PLT6_ARATH1.098e-1931.86Probable polyol transporter 6 OS=Arabidopsis thali... [more]
ITR1_YEAST1.098e-1928.92Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
ARAE_BACSU1.098e-1930.00Arabinose-proton symporter OS=Bacillus subtilis GN... [more]
PLT5_ARATH1.433e-1928.57Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLST2_ARATH1.433e-1933.66Probable plastidic glucose transporter 2 OS=Arabid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835376 ID=CF835376; Name=CF835376; organism=Citrus sinensis; type=EST; length=877bp
TTTTTTTTTTTTTTTCCCAAAACTGGAGATAATTATTTACTACCCCTTAA
TGTTCCAGTGAAAAAGAGTAATTTATCCATTGCCCTTTCCTTTTCCCCTT
CAACAACACCACAAAGCAACTGTCGTAGACCGCCCCTACAGATGATACAA
TGAACTATGGAGCAATGATGGAAGCAATTCGCACAAATAAAAGCGCATTG
ACATATACTTGGGAAGGATTAGGACACATGGGTGGAGAAGCTCTTTATTA
CAAATGCAAGCCAACAATTTTATCTGAAGGAAAACTGAATTTCTTCCAGA
CTTCTTCCTTTGGTTTCAGGAACCCAGAGAGACACAAAAGCAACAGTGAA
AGCACACACTATCCCGTATATCAAGAAGGTGCCTCCACTGCTCCAATCTA
ACAGAAAATTTGCAGTCATTGTGACAATCCACGATACCAGCCAGTTTGCC
AACGTTGCAACACTGCCAGCAAGGCTCTTGATATTCACTGGAAGTATCTC
GGACATTATAACCCAAGGAATAGCTCCAACTCCCAAAGAGAATGAAATCA
CTACAGTCACAAGACCGACAAGCGACAATATCCCCAATATGCTATAAAAG
CGAGAATCTTCTGACACAAAACCCTCCAAAAAGAATGCAATCGAAACAAG
GAAAAAACTAGCAGCCATTCCAGATGATGATATTAAAAGAAGAAGCCTGC
GGCCAGCTTTGTCCATCAACCATGTATTGACCCCAGTGGCAACAACCTGA
ACAACCCCAAGTCCAAATGTAGCAACGTTACTTGATGAAATCCCAGCGTT
AGCAAAAATGTTACTGGAATAGAATAAAACACCATTGATGCCACTGAGTT
GCTGAAGAACCAGTAATCCTATTCCTA
back to top