CF835377

Overview
NameCF835377
Unique NameCF835377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: S22A1_BOVIN (Solute carrier family 22 member 1 OS=Bos taurus GN=SLC22A1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.529e-11
Identity = 52/178 (29.21%), Postives = 91/178 (51.12%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKLTISE---FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF---GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIG-IMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LGP + G+   Y +P  + I+++  L   +     +F S  N+G  +G++  G IA+  GRK  L+   +      ++ + + D + L + RLL+G    G     YT+   I E      R ++  + Q++ T+G ++L+ L  +  +WR L +   LP  LL+   +F+PESPRWL
Sbjct:  113 LGPCEQGWV--YDTPGSS-IVTEFNLVCDDSWKVDLFQSCVNLGFFLGSLGVGYIADRFGRKVCLLATTLTCASLGVLTAVAPDYTSLLIFRLLQGLVSKGSWTAGYTL---ITEFVGLGYRRTVAILYQMAFTVGLVLLSGLAYILPHWRWLQLAVSLPIFLLLFRFWFVPESPRWL 284          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: S22A1_MOUSE (Solute carrier family 22 member 1 OS=Mus musculus GN=Slc22a1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 50/178 (28.09%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKLTISE---FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF---GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            L P + G+   Y +P  + I+++  L   +     +F S  N+G  +G++  G IA+  GRK  L++  +   +  ++ + + D + + + RLL+G    G  V  YT+   I E      R +   + Q++ T+G++ LA +     +WR L +   LP  L +   +F+PESPRWL
Sbjct:  119 LSPCEHGWV--YDTPGSS-IVTEFNLVCGDAWKVDLFQSCVNLGFFLGSLVVGYIADRFGRKLCLLVTTLVTSLSGVLTAVAPDYTSMLLFRLLQGMVSKGSWVSGYTL---ITEFVGSGYRRTTAILYQVAFTVGLVGLAGVAYAIPDWRWLQLAVSLPTFLFLLYYWFVPESPRWL 290          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: S22A1_HUMAN (Solute carrier family 22 member 1 OS=Homo sapiens GN=SLC22A1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 53/181 (29.28%), Postives = 91/181 (50.28%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKLTISE---FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF---GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM----LAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LGP Q G+   Y +P  + I+++  L  ++     +F S  N G   G++  G  A+  GRK  L+   + N +  ++++FS +   + + RLL+G    G  +  YT+   I E      R ++  + Q++ T+G++    LAY L    +WR L +   LP  L +   + +PESPRWL
Sbjct:  118 LGPCQDGWV--YDTPGSS-IVTEFNLVCADSWKLDLFQSCLNAGFFFGSLGVGYFADRFGRKLCLLGTVLVNAVSGVLMAFSPNYMSMLLFRLLQGLVSKGNWMAGYTL---ITEFVGSGSRRTVAIMYQMAFTVGLVALTGLAYAL---PHWRWLQLAVSLPTFLFLLYYWCVPESPRWL 289          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GHT1_SCHPO (High-affinity glucose transporter ght1 OS=Schizosaccharomyces pombe GN=ght1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 43/144 (29.86%), Postives = 77/144 (53.47%), Query Frame = 1
Query:  361 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF--LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            + NVG+  G + S    + IG++ S++   V  +IG +II  +   S+  + + ++  G G+G +S   P Y +E+AP ++RG++    QL VT GI +A  + +          WRV   + +L   + + G+ F+ ESPR+L
Sbjct:   64 MVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIG-VIIQVTAVPSWVQIMVAKIWTGLGIGALSVLAPGYQSEVAPPHIRGTIVVTYQLCVTAGIFIAACINMGTHKLYKTAQWRVSIGINLLWGIITLVGVSFLSESPRYL 206          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: SNF3_YEAST (High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae GN=SNF3 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 50/186 (26.88%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  250 ALGPIQFGFTCGY-SSPTQAEIISDL------KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNI-IGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFV-------NWRVLAVLGVLPCTLLIPGLFFIPESPRW 762
            A+G   FG+  G  +S T    +           T  + SI  S  ++G   GA+ +  I++  GRK +++ + +    IG  +   +   + L +GR++ G G+G IS  VP+Y AE   +++RG++ S  Q ++T G++++  +           ++R+   L  +  + L  G+FF+PESPR+
Sbjct:  105 AVGGFLFGYDTGLINSITSMNYVKSHVAPNHDSFTAQQMSILVSFLSLGTFFGALTAPFISDSYGRKPTIIFSTIFIFSIGNSLQVGAGGITLLIVGRVISGIGIGAISAVVPLYQAEATHKSLRGAIISTYQWAITWGLLVSSAVSQGTHARNDASSYRIPIGLQYVWSSFLAIGMFFLPESPRY 290          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: S22A2_PIG (Solute carrier family 22 member 2 OS=Sus scrofa GN=SLC22A2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 49/178 (27.53%), Postives = 91/178 (51.12%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKLTISE---FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGF---GVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIM-LAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LGP ++G+   Y +P  + I+++  L  +      +F S  NVG  +G++  G IA+  GRK  L++  + N +  ++++ S   +++ + RL++G       +I Y   + I E    + R ++G   Q++ T G++ LA +     +WR L     LP    +   + +PESPRWL
Sbjct:  118 LGPCRYGWV--YDTPGSS-IVTEFDLVCANSWLLDLFQSAVNVGFFIGSVGIGYIADRFGRKLCLLLTILINAVSGVLMAISPTYTWMLVFRLIQGLVSKAGWMIGY---ILITEFVGLSYRRTVGIFYQVAFTFGLLVLAGVAYALPHWRWLQFTVTLPNFCFLFYYWCVPESPRWL 289          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GHT6_SCHPO (High-affinity fructose transporter ght6 OS=Schizosaccharomyces pombe GN=ght6 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 42/147 (28.57%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  361 LANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFM--GRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN---------WRVLAVLGVLPCTLLIPGLFFIPESPRWLA 768
            + N G  VG + S  + +  G++  +M   +  I G +I+  +   S++ M   ++  G G+G +S   P Y +E +P ++RG++ +  QL +T+GI +A  + +  +         WRV   + +L   L+  G+ F+PESPR+LA
Sbjct:   64 MVNTGTTVGCLLSSPLGDRFGKRKCIMGWTLVYITG-VIVQLTTIPSWVQMMVAKIWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFITLGIFIAACINMGTHKYTTHPEAQWRVPIGINLLWGILMFFGMLFLPESPRYLA 209          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GHT3_SCHPO (High-affinity gluconate transporter ght3 OS=Schizosaccharomyces pombe GN=ght3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 1
Query:  367 NVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            N G + GA+ S    E IG+K S+   +   II  L++  +  S   + +G++L G G+G +S   P Y +E+AP  +RG++ +  Q+  T   ++A  + +         +WR    + +L   LL+ G+ F+PESPR+L
Sbjct:   66 NAGCLFGAMLSSPFTERIGKKYSICFFSGVYIIAELLLVTAVPSWIQVLVGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFSTGAALVAACINMGTHKLRKTASWRTSFGINMLWGILLMVGVLFLPESPRYL 206          
The following BLAST results are available for this feature:
BLAST of CF835377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
S22A1_BOVIN1.529e-1129.21Solute carrier family 22 member 1 OS=Bos taurus GN... [more]
S22A1_MOUSE1.997e-1128.09Solute carrier family 22 member 1 OS=Mus musculus ... [more]
S22A1_HUMAN2.608e-1129.28Solute carrier family 22 member 1 OS=Homo sapiens ... [more]
GHT1_SCHPO2.608e-1129.86High-affinity glucose transporter ght1 OS=Schizosa... [more]
SNF3_YEAST4.449e-1126.88High-affinity glucose transporter SNF3 OS=Saccharo... [more]
S22A2_PIG4.449e-1127.53Solute carrier family 22 member 2 OS=Sus scrofa GN... [more]
GHT6_SCHPO4.449e-1128.57High-affinity fructose transporter ght6 OS=Schizos... [more]
GHT3_SCHPO4.449e-1130.50High-affinity gluconate transporter ght3 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835377 ID=CF835377; Name=CF835377; organism=Citrus sinensis; type=EST; length=771bp
ACGATCTCTTTGAAGCATTCCATCAAATCAATAATCATCCAAACACCAAC
ACCGTCTCCGTCGATCGTAAAGTAACGAGAGGCAATGAGTTTTAGAGACG
ATAATGAAGAAGCGGCTAATCTCCGTAAGCCGTTTCTCCACACGGGGAGT
TGGTACAAAATGGGCTCCAGACAGTCGAGTATCATGTCGTCATCGGCTCA
GATGCTTCGTGACGGCTCCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCG
CCCTCGGCCCCATCCAATTCGGTTTCACTTGTGGCTACTCTTCACCTACG
CAAGCCGAAATCATCAGCGATCTTAAACTTACAATTTCGGAGTTCTCTAT
ATTTGGCTCTTTAGCCAATGTGGGTGCTATGGTTGGTGCAATAGCTAGCG
GTCAGATAGCAGAGTACATTGGCCGAAAAGGGTCCCTAATGATTGCTGCT
GTTCCTAATATTATAGGATGGCTCATCATATCTTTCTCCAAAGATTCCTC
GTTTTTATTTATGGGAAGGTTGTTGGAAGGATTTGGTGTTGGTGTAATCT
CTTACACGGTGCCCGTGTACATAGCTGAGATAGCACCTCAAAATATGAGA
GGAAGTCTTGGATCTGTCAATCAGCTCTCAGTTACGATTGGAATTATGCT
GGCGTATCTATTGGGGCTTTTTGTCAATTGGAGAGTGCTTGCGGTTTTAG
GAGTTCTGCCATGTACATTGTTGATACCTGGATTGTTTTTCATACCAGAA
TCTCCTCGATGGCTGGCCAAA
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