CF835377

Overview
NameCF835377
Unique NameCF835377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.330e-31
Identity = 76/176 (43.18%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISD----LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ALGP+ FGF  GYSSP    +       L+L  +  S FG++  +GA  G +  G + +  GRK SL++  VP + G+ +I+ ++D   L  GRLL G   GV S   PVYI+EIA   +RG LGS  QL V  GI+LAY+ G  + WR LAVLG +P TL++  + ++PE+PR+L
Sbjct:   34 ALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDTAASWFGAVVTLGAAAGGVLGGWLLDRAGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVTGILLAYVAGWVLEWRWLAVLGCVPPTLMLLLMCYMPETPRFL 209          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR8_MOUSE (Solute carrier family 2, facilitated glucose transporter member 8 OS=Mus musculus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.330e-31
Identity = 77/176 (43.75%), Postives = 107/176 (60.80%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISD----LKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ALGP+ FGF  GYSSP    +       L+L  +  S FG++  +GA  G I  G + +  GRK SL++  VP + G+ +I+ ++D   L  GRLL G   GV S   PVYI+EIA   +RG LGS  QL V  GI+LAY+ G  + WR LAVLG +P TL++  + ++PE+PR+L
Sbjct:   34 ALGPLSFGFALGYSSPAIPSLRRTAPPALRLGDNAASWFGAVVTLGAAAGGILGGWLLDRSGRKLSLLLCTVPFVTGFAVITAARDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVTGILLAYVAGWVLEWRWLAVLGCVPPTLMLLLMCYMPETPRFL 209          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR8_BOVIN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Bos taurus GN=SLC2A8 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.299e-30
Identity = 73/176 (41.48%), Postives = 104/176 (59.09%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLK----LTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ALGP+ FGF  GYSSP    +         L     S FG++  +GA  G +  G + +  GRK SL++ A+P + G+ +I+ +++   L  GRLL G   G+ S   PVYI+EIA   +RG LGS  QL V  GI+LAYL G  + WR LAVLG +P + ++  + F+PE+PR+L
Sbjct:   34 ALGPLSFGFALGYSSPAIPSLRRAAPPAPHLDEDAASWFGAIVTLGAAAGGVLGGWLLDRAGRKLSLVLCALPFVAGFAVITAAQNLWMLLGGRLLTGLACGIASLVAPVYISEIAYPEVRGLLGSCVQLMVVTGILLAYLAGWVLEWRWLAVLGCVPPSFMLLLMCFMPETPRFL 209          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR6_HUMAN (Solute carrier family 2, facilitated glucose transporter member 6 OS=Homo sapiens GN=SLC2A6 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 68/175 (38.86%), Postives = 104/175 (59.43%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPT----QAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            LG   FG+   Y+SP     +  +  DL LT S+ S FGS+  +GA  G +++  + + +GRK S+M +AVP+  G+ +++ +     L +GR L GF  G+ +  +PVY++EIAP  +RG+LG+  QL    G +  Y LGL + WR LAV G  P  ++I  L F+P SPR+L
Sbjct:   47 LGNFSFGYALVYTSPVIPALERSLDPDLHLTKSQASWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFSAVPSAAGYALMAGAHGLWMLLLGRTLTGFAGGLTAACIPVYVSEIAPPGVRGALGATPQLMAVFGSLSLYALGLLLPWRWLAVAGEAPVLIMILLLSFMPNSPRFL 221          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: PLST4_ARATH (Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.395e-26
Identity = 69/181 (38.12%), Postives = 103/181 (56.91%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKL---TISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN-----WRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            LG I FG+  G  +     +  DL +   T+ +  I  SL   GA VG+   G +A+  GR  +  + A+P  IG  + + ++    + +GRLL G G+G+ S  VP+YI+EI+P  +RG+LGSVNQL + IGI+ A + GL +      WR +  + V+P  LL  G+ F PESPRWL +
Sbjct:  114 LGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLL-AGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQ 293          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 68/177 (38.42%), Postives = 102/177 (57.63%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN----WRVLAVLGVLPCTLLIPGLFFIPESPRWLA 768
            AL  + FG   G  +     I  + ++T        S    GA VGA+ SG ++  +GRK SLMI A+  + G L  + + +   L + R+L G  VGV SYT P+Y++EIAP+ +RGS+ S+ QL +TIGI+ AYL     +    WR +  + ++P  LL+ G+FF+P+SPRW A
Sbjct:   23 ALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFA 199          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GALP_ECOL6 (Galactose-proton symporter OS=Escherichia coli O6 GN=galP PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.352e-26
Identity = 68/177 (38.42%), Postives = 102/177 (57.63%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLFVN----WRVLAVLGVLPCTLLIPGLFFIPESPRWLA 768
            AL  + FG   G  +     I  + ++T        S    GA VGA+ SG ++  +GRK SLMI A+  + G L  + + +   L + R+L G  VGV SYT P+Y++EIAP+ +RGS+ S+ QL +TIGI+ AYL     +    WR +  + ++P  LL+ G+FF+P+SPRW A
Sbjct:   23 ALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFA 199          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 64/178 (35.96%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL----FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            ALG + +G+  G  S     I +D+ LT     +  S+  +GA+ G+  SG  ++  GR+  + + ++  IIG L  +FS+    L   R++ G  VG  +  VPVY++E+AP  +RG+LG++N L +  GI+LAY++      F  WR +  L  +P  LL+ G+ F+PESPRWL K
Sbjct:   15 ALGGLLYGYDTGVISGALLFINNDIPLTTLTEGLVVSMLLLGAIFGSALSGTCSDRWGRRKVVFVLSIIFIIGALACAFSQTIGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRGTLGTMNNLMIVTGILLAYIVNYLFTPFEAWRWMVGLAAVPAVLLLIGIAFMPESPRWLVK 192          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.575e-24
Identity = 62/176 (35.23%), Postives = 108/176 (61.36%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-LFVN---WRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ALG   +G+  G  S     +  +L L      +  S   VGA++G+ A+G++ +  GRK ++M AA+   IG L ++ + ++  + + R++ G  VG  +  VP+Y++E+AP++ RG+L S+NQL +T+GI+L+Y++  +F +   WR +  L  +P  LL+ G+ F+PESPRWL
Sbjct:   14 ALGGALYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFADAEAWRWMLGLAAVPSLLLLIGILFMPESPRWL 189          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.985e-24
Identity = 58/175 (33.14%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  262 IQFGFTCGYSSPTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYL-------LGLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            I  G+  G  S     I  DLK+   +  I     N+ +++G+ A+G+ +++IGR+ ++++A      G +++  S + +FL  GR + G GVG      PVY AE++P + RG L S  ++ +  GIML Y+       L L V WR++  +G +P  +L  G+  +PESPRWL
Sbjct:   48 ILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVILAIGVLAMPESPRWL 222          
The following BLAST results are available for this feature:
BLAST of CF835377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
GTR8_RAT1.330e-3143.18Solute carrier family 2, facilitated glucose trans... [more]
GTR8_MOUSE1.330e-3143.75Solute carrier family 2, facilitated glucose trans... [more]
GTR8_BOVIN7.299e-3041.48Solute carrier family 2, facilitated glucose trans... [more]
GTR6_HUMAN5.231e-2838.86Solute carrier family 2, facilitated glucose trans... [more]
PLST4_ARATH6.395e-2638.12Plastidic glucose transporter 4 OS=Arabidopsis tha... [more]
GALP_ECOLI8.352e-2638.42Galactose-proton symporter OS=Escherichia coli (st... [more]
GALP_ECOL68.352e-2638.42Galactose-proton symporter OS=Escherichia coli O6 ... [more]
CSBC_BACSU3.174e-2535.96Probable metabolite transport protein csbC OS=Baci... [more]
YWTG_BACSU1.575e-2435.23Putative metabolite transport protein ywtG OS=Baci... [more]
PLT5_ARATH5.985e-2433.14Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835377 ID=CF835377; Name=CF835377; organism=Citrus sinensis; type=EST; length=771bp
ACGATCTCTTTGAAGCATTCCATCAAATCAATAATCATCCAAACACCAAC
ACCGTCTCCGTCGATCGTAAAGTAACGAGAGGCAATGAGTTTTAGAGACG
ATAATGAAGAAGCGGCTAATCTCCGTAAGCCGTTTCTCCACACGGGGAGT
TGGTACAAAATGGGCTCCAGACAGTCGAGTATCATGTCGTCATCGGCTCA
GATGCTTCGTGACGGCTCCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCG
CCCTCGGCCCCATCCAATTCGGTTTCACTTGTGGCTACTCTTCACCTACG
CAAGCCGAAATCATCAGCGATCTTAAACTTACAATTTCGGAGTTCTCTAT
ATTTGGCTCTTTAGCCAATGTGGGTGCTATGGTTGGTGCAATAGCTAGCG
GTCAGATAGCAGAGTACATTGGCCGAAAAGGGTCCCTAATGATTGCTGCT
GTTCCTAATATTATAGGATGGCTCATCATATCTTTCTCCAAAGATTCCTC
GTTTTTATTTATGGGAAGGTTGTTGGAAGGATTTGGTGTTGGTGTAATCT
CTTACACGGTGCCCGTGTACATAGCTGAGATAGCACCTCAAAATATGAGA
GGAAGTCTTGGATCTGTCAATCAGCTCTCAGTTACGATTGGAATTATGCT
GGCGTATCTATTGGGGCTTTTTGTCAATTGGAGAGTGCTTGCGGTTTTAG
GAGTTCTGCCATGTACATTGTTGATACCTGGATTGTTTTTCATACCAGAA
TCTCCTCGATGGCTGGCCAAA
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