CF835377

Overview
NameCF835377
Unique NameCF835377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1103 contig Csv1_Contig1103:1..771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR5_BOVIN (Solute carrier family 2, facilitated glucose transporter member 5 OS=Bos taurus GN=SLC2A5 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 57/162 (35.19%), Postives = 93/162 (57.41%), Query Frame = 1
Query:  307 EIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFS---KDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            E +++  LT+  +S+  S+   G  +G++  G +   +GRKG+L+   + +I+  L++ FS   K    + + R+L G   G+ S  VP+Y+ E+AP+N RG+LG V QL +TIGI++A + GL         W +L  L  +P  L +  L F PESPR+L
Sbjct:   60 EYMNEFYLTLL-WSVTVSMFPFGGFLGSLMVGPLVNNLGRKGTLLFNNIFSIVPALLMGFSELAKSFEMIIVARVLVGICAGLSSNVVPMYLGELAPKNWRGALGVVPQLFITIGILVAQIFGLRSLLANEEGWPILLGLTGIPAVLQLLFLPFFPESPRYL 220          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR3_MOUSE (Solute carrier family 2, facilitated glucose transporter member 3 OS=Mus musculus GN=Slc2a3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.291e-18
Identity = 59/194 (30.41%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDLKLTISE--------------FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-FV-----NWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            +G  QFG+  G  +  +  +   L  T+ E              +S+  ++ +VG M+G+ + G      GR+ S+++  +  II   ++ F+K +     L +GRLL G   G+ +  VP+YI E++P  +RG+ G++NQL + +GI++A + GL F+      W  L  L ++P  L    L F PESPR+L
Sbjct:   19 IGSFQFGYNTGVINAPETILKDFLNYTLEERLEDLPSEGLLTALWSLCVAIFSVGGMIGSFSVGLFVNRFGRRNSMLLVNLLAIIAGCLMGFAKIAESVEMLILGRLLIGIFCGLCTGFVPMYIGEVSPTALRGAFGTLNQLGIVVGILVAQIFGLDFILGSEELWPGLLGLTIIPAILQSAALPFCPESPRFL 212          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: XYLL2_ARATH (D-xylose-proton symporter-like 2 OS=Arabidopsis thaliana GN=At5g17010 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.687e-18
Identity = 58/184 (31.52%), Postives = 101/184 (54.89%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEI-------ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-LFVN----WRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            ALG + +G+  G +S     +       IS   L+  +  +  S +  GA+ G+I +  IA+ IGR+  L++AA+  ++G L+ + +   S L +GR++ G  VG+  +  P+YIAE AP  +RG L S+ +  + +G++  Y +G L VN    WR +    V    ++  G++++P SPRWL
Sbjct:   55 ALGGLLYGYEIGATSCATISLQSPSLSGISWYNLSSVDVGLVTSGSLYGALFGSIVAFTIADVIGRRKELILAALLYLVGALVTALAPTYSVLIIGRVIYGVSVGLAMHAAPMYIAETAPSPIRGQLVSLKEFFIVLGMVGGYGIGSLTVNVHSGWRYMYATSVPLAVIMGIGMWWLPASPRWL 238          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 56/181 (30.94%), Postives = 98/181 (54.14%), Query Frame = 1
Query:  253 LGPIQFGFTCGYSSPTQAEIISDL---KLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-----LFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            +G + FG+  G  S     I + L   +LT        S  ++GA++G I +G +A++ GRK  + IA++  I+G ++   +     + +GR + G+GVG+ S  +P+Y++EIAP  +RG L  +  L +T G ++AY +      +   WR +  L ++P    +  L ++PESPR L K
Sbjct:   96 IGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGWRWMVGLAMVPAAFQLFILIWLPESPRLLVK 276          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT4_YEAST (Low-affinity glucose transporter HXT4 OS=Saccharomyces cerevisiae GN=HXT4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.758e-18
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            S+ N+G  +G I   ++ +  GRK  L++  V  IIG +I   S +  +  F+GR++ G GVG I+   P+ I+E++P+++RG+L S  QL +T+GI L Y            V WRV   LG      +I G+ F+PESPR+L +
Sbjct:  126 SIFNIGCAIGGIILAKLGDMYGRKMGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVSPKHIRGTLVSCYQLMITLGIFLGYCTNYGTKTYTNSVQWRVPLGLGFAWALFMIGGMTFVPESPRYLVE 271          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT14_YEAST (Hexose transporter HXT14 OS=Saccharomyces cerevisiae GN=HXT14 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.908e-18
Identity = 56/165 (33.94%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  313 ISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDS-SFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGLF-----------VNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            +S  KLT  +  +  S+ N+   VGA+   +I ++IGRKG +  A V   IG  I   S     FL +GR + G GVGV +  VP++++E +P  +RGS+ S  QL VT GI++  +L              + W++   LG +   ++   L ++PESP++LAK
Sbjct:  108 VSTKKLTDLQIGLIISIFNISCGVGALTLSKIGDWIGRKGGIWFALVVYCIGITIQILSYGRWYFLTLGRAVTGIGVGVTTVLVPMFLSENSPLKIRGSMVSTYQLIVTFGILMGNILNFICERCYKDPTQNIAWQLPLFLGYIWAIIIGMSLVYVPESPQYLAK 272          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: HXT3_YEAST (Low-affinity glucose transporter HXT3 OS=Saccharomyces cerevisiae GN=HXT3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.409e-18
Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  358 SLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSF-LFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL-------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            S+ N+G  +G I   ++ +  GRK  L++  V  IIG +I   S +  +  F+GR++ G GVG I+   P+ I+E+AP+ MRG+L S  QL +T+GI L Y            V WRV   L       +I G+ F+PESPR+L +
Sbjct:  117 SIFNIGCAIGGIILAKLGDMYGRKMGLIVVVVIYIIGIIIQIASINKWYQYFIGRIISGLGVGGIAVLSPMLISEVAPKEMRGTLVSCYQLMITLGIFLGYCTNFGTKNYSNSVQWRVPLGLCFAWALFMIGGMTFVPESPRYLVE 262          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: XYLL1_ARATH (D-xylose-proton symporter-like 1 OS=Arabidopsis thaliana GN=At3g03090 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 58/186 (31.18%), Postives = 102/186 (54.84%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSS--------PTQAEIISDLKLTISEFSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLG-----LFVNWRVLAVLGVLPCTLLI-PGLFFIPESPRWL 765
            ALG + FG+  G +S        PT + I S   L+  +  I  S +  GA++G+I +  +A+ IGR+  L++AA   ++G ++   +   S L +GR+  G G+G+  +  P+YIAE AP  +RG + S+ + S  +G++  Y +G     +   WR +    +LP  +++  G+ ++P SPRWL
Sbjct:   55 ALGALLFGYEIGATSCAIMSLKSPTLSGI-SWYDLSSVDVGIITSGSLYGALIGSIVAFSVADIIGRRKELILAAFLYLVGAIVTVVAPVFSILIIGRVTYGMGIGLTMHAAPMYIAETAPSQIRGRMISLKEFSTVLGMVGGYGIGSLWITVISGWRYMYAT-ILPFPVIMGTGMCWLPASPRWL 238          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: GTR3_CHICK (Solute carrier family 2, facilitated glucose transporter member 3 OS=Gallus gallus GN=SLC2A3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 55/195 (28.21%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  250 ALGPIQFGFTCGYSSPTQAEIISDLKLTISE--------------FSIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSS---FLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLLGL------FVNWRVLAVLGVLPCTLLIPGLFFIPESPRWL 765
            A+G +QFG+  G  +  +  I +    T+S+              +S+  ++ +VG M+G+ +        GR+ S+++  V    G  +++ SK +     L +GR + G   G+ +  VP+YI+E++P ++RG+ G++NQL + +GI++A + GL         W +L    ++P  L    L F PESPR+L
Sbjct:   19 AIGSLQFGYNTGVINAPEKIIQAFYNRTLSQRSGETISPELLTSLWSLSVAIFSVGGMIGSFSVSLFFNRFGRRNSMLLVNVLAFAGGALMALSKIAKAVEMLIIGRFIIGLFCGLCTGFVPMYISEVSPTSLRGAFGTLNQLGIVVGILVAQIFGLEGIMGTEALWPLLLGFTIVPAVLQCVALLFCPESPRFL 213          
BLAST of CF835377 vs. ExPASy Swiss-Prot
Match: ARAE_BACSU (Arabinose-proton symporter OS=Bacillus subtilis GN=araE PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 1
Query:  271 GFTCGYSSPTQAEIISDLK--LTISEF--SIFGSLANVGAMVGAIASGQIAEYIGRKGSLMIAAVPNIIGWLIISFSKDSSFLFMGRLLEGFGVGVISYTVPVYIAEIAPQNMRGSLGSVNQLSVTIGIMLAYLL------------GLFVNWRVLAVLGVLPCTLLIPGLFFIPESPRWLAK 771
            G   GY +   +  I  LK   ++S F   +  S   +G +VG   SG +++  GR+  LM AA+   I  ++ + S+D S L + R++ G G+G+ S     YI E AP  +RGSL S+ QL   +GI   Y +            G+   WR +   G++P  +    L  +PESPRWLAK
Sbjct:   34 GLLYGYDTAVISGAIGFLKDLYSLSPFMEGLVISSIMIGGVVGVGISGFLSDRFGRRKILMTAALLFAISAIVSALSQDVSTLIIARIIGGLGIGMGSSLSVTYITEAAPPAIRGSLSSLYQLFTILGISATYFINLAVQRSGTYEWGVHTGWRWMLAYGMVPSVIFFLVLLVVPESPRWLAK 216          
The following BLAST results are available for this feature:
BLAST of CF835377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
GTR5_BOVIN1.291e-1835.19Solute carrier family 2, facilitated glucose trans... [more]
GTR3_MOUSE1.291e-1830.41Solute carrier family 2, facilitated glucose trans... [more]
XYLL2_ARATH1.687e-1831.52D-xylose-proton symporter-like 2 OS=Arabidopsis th... [more]
ITR1_SCHPO3.758e-1830.94Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
HXT4_YEAST3.758e-1836.30Low-affinity glucose transporter HXT4 OS=Saccharom... [more]
HXT14_YEAST4.908e-1833.94Hexose transporter HXT14 OS=Saccharomyces cerevisi... [more]
HXT3_YEAST6.409e-1836.99Low-affinity glucose transporter HXT3 OS=Saccharom... [more]
XYLL1_ARATH8.371e-1831.18D-xylose-proton symporter-like 1 OS=Arabidopsis th... [more]
GTR3_CHICK8.371e-1828.21Solute carrier family 2, facilitated glucose trans... [more]
ARAE_BACSU8.371e-1832.79Arabinose-proton symporter OS=Bacillus subtilis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C07_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835377 ID=CF835377; Name=CF835377; organism=Citrus sinensis; type=EST; length=771bp
ACGATCTCTTTGAAGCATTCCATCAAATCAATAATCATCCAAACACCAAC
ACCGTCTCCGTCGATCGTAAAGTAACGAGAGGCAATGAGTTTTAGAGACG
ATAATGAAGAAGCGGCTAATCTCCGTAAGCCGTTTCTCCACACGGGGAGT
TGGTACAAAATGGGCTCCAGACAGTCGAGTATCATGTCGTCATCGGCTCA
GATGCTTCGTGACGGCTCCGTCTCCGTTGTCTTTTGCGTCCTCGTCGTCG
CCCTCGGCCCCATCCAATTCGGTTTCACTTGTGGCTACTCTTCACCTACG
CAAGCCGAAATCATCAGCGATCTTAAACTTACAATTTCGGAGTTCTCTAT
ATTTGGCTCTTTAGCCAATGTGGGTGCTATGGTTGGTGCAATAGCTAGCG
GTCAGATAGCAGAGTACATTGGCCGAAAAGGGTCCCTAATGATTGCTGCT
GTTCCTAATATTATAGGATGGCTCATCATATCTTTCTCCAAAGATTCCTC
GTTTTTATTTATGGGAAGGTTGTTGGAAGGATTTGGTGTTGGTGTAATCT
CTTACACGGTGCCCGTGTACATAGCTGAGATAGCACCTCAAAATATGAGA
GGAAGTCTTGGATCTGTCAATCAGCTCTCAGTTACGATTGGAATTATGCT
GGCGTATCTATTGGGGCTTTTTGTCAATTGGAGAGTGCTTGCGGTTTTAG
GAGTTCTGCCATGTACATTGTTGATACCTGGATTGTTTTTCATACCAGAA
TCTCCTCGATGGCTGGCCAAA
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