CF835380

Overview
NameCF835380
Unique NameCF835380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:960..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.677e-32
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = -2
Query:  228 MAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 572
            MA++K+V   ++  +V  P++  AITCG+V  +LAPC+G+L+ G      CC GVR+LN+AA TTPDRQ ACNCLK AA SI  LN NNAA LPG C V+IPYKISTS +C  +R
Sbjct:    1 MASMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIR 115          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.803e-32
Identity = 69/117 (58.97%), Postives = 83/117 (70.94%), Query Frame = -2
Query:  228 MAALKLVSALVL-CMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 572
            MA L  +S LVL CM+V GP++  A ++CG VSG+LA CIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA + P+LN   AAGLP ACGV+IPYKIS S +C  VR
Sbjct:    1 MAGLVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANAFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.193e-32
Identity = 61/91 (67.03%), Postives = 73/91 (80.22%), Query Frame = -2
Query:  228 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 500
            ITCGQVS SLAPCIG++R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ + SI  +N NNAA LPG CGV+IPYKIS S +C  V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.825e-31
Identity = 66/107 (61.68%), Postives = 80/107 (74.77%), Query Frame = -2
Query:  228 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 545
            LV+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV+IPYKISTS +C  V+
Sbjct:    4 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.384e-31
Identity = 66/107 (61.68%), Postives = 79/107 (73.83%), Query Frame = -2
Query:  228 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 545
            LV+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV IPYKISTS +C  V+
Sbjct:   12 LVMCMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  228 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 566
            +LKL   +VLCM+V  PL+  A+T GQV+ SLAPCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS S DC  V+
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = -2
Query:  228 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 566
            +LKL   +VLCM+V  PL+  A+T GQV+ SLAPCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS S DC  V+
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = -2
Query:  228 LVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 545
            LV+CM+V  P++  AI+CG V+  L+PC+ +L +GGP P P CC GV+ L AAA TTPDRQ ACNCLK AA SI  LN NNAA LPG CGV+IPYKIST+ +C  V+
Sbjct:   12 LVICMVVIAPMAEGAISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 59/91 (64.84%), Postives = 71/91 (78.02%), Query Frame = -2
Query:  228 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 500
            ITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV IPYKIS S +C  V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 63/114 (55.26%), Postives = 87/114 (76.32%), Query Frame = -2
Query:  228 LKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSADCYKVR 563
            +KL   L+ CM+V GP+++ A ++CG V+ +LA CIG++  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AAR++ S LN   AAG+P ACGV+IPYKISTS +C  VR
Sbjct:    5 MKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
The following BLAST results are available for this feature:
BLAST of CF835380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_CICAR3.677e-3256.52Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP1_BRANA4.803e-3258.97Non-specific lipid-transfer protein 1 OS=Brassica ... [more]
NLTP1_PRUAR8.193e-3267.03Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP4_LENCU1.825e-3161.68Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP6_LENCU2.384e-3161.68Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_GOSHI3.113e-3155.65Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI3.113e-3155.65Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP2_LENCU4.066e-3160.75Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_PRUPE4.066e-3164.84Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_ARATH4.066e-3155.26Non-specific lipid-transfer protein 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835380 ID=CF835380; Name=CF835380; organism=Citrus sinensis; type=EST; length=594bp
TGAACAAAAGGCACCTTTTAAGGTAATAAAAAGAATAGACACAAACTGAC
GATGCCTTGAAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCG
AACGAGACTCGCAGTACAAAGTGTACAGAGAGACTCATAAATCGGACACA
AAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTG
AAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTATAGCAGTCAGCGG
AGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCA
GCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAA
GCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGA
GAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTC
AAGAAACCGATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTAT
GGCCTGAGCACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGCTG
AAACAAGCTTGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTT
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