CF835380

Overview
NameCF835380
Unique NameCF835380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:960..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_ARATH (Non-specific lipid-transfer protein 2 OS=Arabidopsis thaliana GN=LTP2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = -2
Query:  228 LKLVSALVLCMLVTGPLSAQAI-TCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 563
            +KL   ++ CM+V GP++A A+ +CG V+G+LA CI +L  G P+   CCNGV +L   A TTPDRQ AC CL+ AA+++ P LN   AAGLP AC V+IPYKIS S +C  VR
Sbjct:    5 MKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNMASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTVR 118          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.208e-28
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = -2
Query:  228 ALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 548
            ALV+CM+V  P++  A++CG V+G LAPCI +L  G      CC GV+ L AAA TT DRQ ACNCLK AA +I +LN  NAA LPG C V+IPYKIST+ +C  ++
Sbjct:   11 ALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTIK 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.495e-28
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = -2
Query:  228 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 560
            K+   +VLCM+V  P  A+A++CGQV   LAPC+ +L+  GP+   CC GV+ L  AA++  DR+TAC CLK AA +I  +++  AAGLPGACGV+IPYKIS S DC KV+
Sbjct:    6 KIACFVVLCMVVVAP-HAEALSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = -2
Query:  231 LVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 557
            + +A+V  +L+    S  AI+CGQV+ ++APCI + R  G  P   CC+GVRSLN AARTT DR+ ACNCLK AA  +  LN  NAA +P  CGVSIPY ISTS DC +V
Sbjct:   10 VATAVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = -2
Query:  228 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 566
            AL+  + LVL + +   + A AI+CG V+GSLAPC  +L  GG +P  CC GV++LN+ A+TTPDRQ AC C++  A+SI  LN + A+GLPG CGVSIPY IS S +C  ++
Sbjct:    4 ALRFFTCLVLTVCIVASVDA-AISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = -2
Query:  228 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 566
            AL+  +  VL + +   + A AITCG V+ SL+PC+G+L  GG +P PCC GV+ LN  A+TTPDRQ AC CL+ AA+ + PSL    A+GLPG CGVSIPY ISTS +C  ++
Sbjct:    4 ALRFFTCFVLTVFIVASVDA-AITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPSL----ASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 60/116 (51.72%), Postives = 76/116 (65.52%), Query Frame = -2
Query:  231 QMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 575
            ++A    V A    +++    S  A+TCGQVS ++ PC+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN+  AA +P  CGVSIPY ISTS DC +V
Sbjct:    6 KLAVAIAVVAAAAAVVLAATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = -2
Query:  231 ALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 566
            A+ +V+A+V+ +  T   S  AI+CGQVS ++A C+ + R  G  P   CC+GVRSLN+AARTT DR+ ACNCLK AAR I  LN  NAA +P  CGVS+PY ISTS DC +V
Sbjct:    7 AIAVVAAVVVVLAAT--TSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.088e-27
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = -2
Query:  231 AALKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 569
            A L LV+ +   +L+ GP +  A I+CGQV+ +++PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DC  V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.088e-27
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = -2
Query:  231 MAALKLVS-ALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 572
            MA  +LV  ALV  +L+ GP +  A I+CGQV+ +++PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DC  V
Sbjct:    1 MARAQLVLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
The following BLAST results are available for this feature:
BLAST of CF835380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_ARATH3.222e-2852.63Non-specific lipid-transfer protein 2 OS=Arabidops... [more]
NLTP3_LENCU4.208e-2855.14Non-specific lipid-transfer protein 3 OS=Lens culi... [more]
NLTP2_TOBAC5.495e-2853.15Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP_MAIZE9.373e-2854.55Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP3_ARATH9.373e-2851.33Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP4_ARATH1.224e-2752.63Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP2_SORBI1.224e-2751.72Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SORBI1.224e-2754.87Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_ORYSI2.088e-2752.63Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ2.088e-2754.31Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835380 ID=CF835380; Name=CF835380; organism=Citrus sinensis; type=EST; length=594bp
TGAACAAAAGGCACCTTTTAAGGTAATAAAAAGAATAGACACAAACTGAC
GATGCCTTGAAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCG
AACGAGACTCGCAGTACAAAGTGTACAGAGAGACTCATAAATCGGACACA
AAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTG
AAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTATAGCAGTCAGCGG
AGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCA
GCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAA
GCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGA
GAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTC
AAGAAACCGATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTAT
GGCCTGAGCACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGCTG
AAACAAGCTTGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTT
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