CF835380

Overview
NameCF835380
Unique NameCF835380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:960..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.088e-27
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = -2
Query:  231 AALKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 569
            A L LV+ +   +L+ GP +  A I+CGQV+ +++PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DC  V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.727e-27
Identity = 66/119 (55.46%), Postives = 84/119 (70.59%), Query Frame = -2
Query:  228 MAALKLVSALV--LCMLV-TGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 572
            MA+L+ VS LV  +CM+V + P++  AI+CG VSG+L PC+ +L+ GGP P P CC GV+ LN AARTT DR+ ACNCLK +A SI  L   N A LPG CGV +PY ISTS +C  +R
Sbjct:    1 MASLR-VSCLVALMCMVVISAPMAEAAISCGTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.652e-27
Identity = 65/117 (55.56%), Postives = 74/117 (63.25%), Query Frame = -2
Query:  228 MAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNA--AGLPGACGVSIPYKISTSADCYKVR 572
            MA    V  L+L   + G  +A AITCGQV   L  C+G+ R GG IP  CC GVR+LN  A+TTPDRQTACNCLK      PSL LN A  AG+PG CGV+IPY I    DC KVR
Sbjct:    1 MARSSAVCFLLLLAFLIG--TASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVN--PSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 58/110 (52.73%), Postives = 74/110 (67.27%), Query Frame = -2
Query:  240 AALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADC 569
            A +K   ALV+CM+V  PL A+AITCG V+  LAPCIG+L+        CC G++SLN+AA +  DR+TAC CLK AA SI  +N   AA LP  CGVS+PY IS + +C
Sbjct:    5 AFVKFTCALVMCMMVAAPL-AEAITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNC 113          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.076e-27
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = -2
Query:  228 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 560
            K+   ++LCM+V  P  A+A+TCGQV+  LAPC+ +L+  GP+   CC GV++L  +A+TT DR+TAC CLK AA +I  ++LN AAG+P  C V+IPYKIS S DC  V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = -2
Query:  228 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 560
            K+   ++LCM+V  P  A+A+TCGQV+  LAPC+ +L+  GP+   CC GV+ L  +A+TT DR+TAC CLK AA +I  ++LN AAG+P  C V+IPYKIS S DC  V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.354e-26
Identity = 59/111 (53.15%), Postives = 76/111 (68.47%), Query Frame = -2
Query:  228 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 560
            K+   ++LCM+V  P  A+A+TCGQV+ +LAPC+ +L + GP+   CC GV+ L   A+TT DRQTAC CLK AA S   L+L  AA LP  C V+IPYKIS S DC KV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.143e-26
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  231 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 500
            ++CG V+  LAPCI +LRS GP+P+ CCNGV++L  +A TT DR+TAC CL  A++SI  +N   AAGLPG CGV+IPYKIS S +C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.143e-26
Identity = 56/111 (50.45%), Postives = 75/111 (67.57%), Query Frame = -2
Query:  228 KLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 560
            K+   +V CM+V  P  A++++CG+V+  LAPC+ +L   GP+   CC GV+ L  AA+T  DR+TAC CLK AA SI  ++   AAGLPG CGV+IPYKIS S DC  V+
Sbjct:    6 KIACFVVFCMVVVAP-HAESLSCGEVTSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.717e-26
Identity = 60/114 (52.63%), Postives = 79/114 (69.30%), Query Frame = -2
Query:  228 LKLVSALVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSADCYKVR 563
            LKL + +++CMLVT P++++A I+CG V+GSL  C  +L  GG IP  CC+GV+ LN+ ARTT DRQ AC C++ AAR++ S LN   AA LPGAC V I Y IS   +C  VR
Sbjct:    5 LKLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
The following BLAST results are available for this feature:
BLAST of CF835380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLT2A_ORYSJ2.088e-2752.63Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP1_LENCU2.727e-2755.46Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
SCA_LILLO4.652e-2755.56Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP_BETVU6.076e-2752.73Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP1_SOLLC6.076e-2751.35Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN7.935e-2751.35Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP2_SOLPN1.354e-2653.15Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP5_VITSX5.143e-2657.78Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP2_SOLLC5.143e-2650.45Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP5_ARATH6.717e-2652.63Non-specific lipid-transfer protein 5 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835380 ID=CF835380; Name=CF835380; organism=Citrus sinensis; type=EST; length=594bp
TGAACAAAAGGCACCTTTTAAGGTAATAAAAAGAATAGACACAAACTGAC
GATGCCTTGAAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCG
AACGAGACTCGCAGTACAAAGTGTACAGAGAGACTCATAAATCGGACACA
AAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTG
AAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTATAGCAGTCAGCGG
AGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCA
GCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAA
GCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGA
GAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTC
AAGAAACCGATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTAT
GGCCTGAGCACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGCTG
AAACAAGCTTGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTT
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