CF835380

Overview
NameCF835380
Unique NameCF835380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:960..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.794e-18
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  228 AITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 503
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C  V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.794e-18
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  228 AITCGQVSGSLAPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKVR 503
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C  V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.829e-16
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = -2
Query:  240 KSQMAALKLVSALVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADC 581
            K     + +++ +V+  L+  P  + AITC  V+G+L PC+ +LRSGG     CC G + L  A RT  DR+TAC C K AA  +  +  + A+ LPG CG+S    I+ + +C
Sbjct:    2 KGTSMGVAILAMIVMAQLMVHP--SVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL-KVRPDMASSLPGKCGISTSIPINPNVNC 112          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.027e-14
Identity = 46/120 (38.33%), Postives = 65/120 (54.17%), Query Frame = -2
Query:  231 KSQMAALKLVSALVLCMLVTGPLSAQ-AITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVS-IPYKISTSADCYKV 581
            K  + A+ +V  +V  M V G +  + AI+C QV  ++ PC  +L      P   CC  +R L++  + TPDRQ  CNCLK  A+S   + L  AA LPG C V+ +   IS + DC KV
Sbjct:    4 KKMVEAVFVVGLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY-GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTPA_RICCO (Non-specific lipid-transfer protein A OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.027e-14
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  231 ITCGQVSGSLAPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 500
            + CGQV+ SLA CI FL  G   P   CC GV++L   A T+ DR+ AC C+K AA   P++  + A+ LP  CGV I   IS + +C  +
Sbjct:    1 VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTSADRRAACECIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAI 91          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = -2
Query:  231 MAALKLVSAL-VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSG-GPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 572
            M  LK ++ + VL +      S  AI+C  V   L PC+ +L SG G  P  CC+GV+SL AA  T+ D++ AC C+K  A S+ ++    A  L   CG S+P   S + DC  V
Sbjct:    1 MNVLKCLAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSV-TVKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CF835380 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.521e-12
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = -2
Query:  231 ITCGQVSGSLAPCIGFLRSGGPIP-MPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSADCYKV 500
            + CGQV+ +L+ C+ FL      P + CC GV  L   A T  D++ AC C+K AA   P++  + A+ LP  CGV I   IS + +C+++
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of CF835380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_AMACA8.794e-1846.81Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP8.794e-1846.81Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP1_HELAN2.829e-1637.72Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP_PINTA2.027e-1438.33Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPA_RICCO2.027e-1442.86Non-specific lipid-transfer protein A OS=Ricinus c... [more]
NLTP8_ARATH3.823e-1337.93Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTPB_RICCO5.521e-1237.36Non-specific lipid-transfer protein B OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835380 ID=CF835380; Name=CF835380; organism=Citrus sinensis; type=EST; length=594bp
TGAACAAAAGGCACCTTTTAAGGTAATAAAAAGAATAGACACAAACTGAC
GATGCCTTGAAAAGCAAAGACAATAAAACATAACATGAAACGAGGGCGCG
AACGAGACTCGCAGTACAAAGTGTACAGAGAGACTCATAAATCGGACACA
AAAATGTCCTTATTATTATACATTTATTCTACTCCGTCAACTTAAACCTG
AAAATCAACGGCCCAGATTCCTGTTCACCTGACCTTATAGCAGTCAGCGG
AGGTGCTGATCTTGTAAGGAATGCTGACTCCACAAGCTCCTGGAAGACCA
GCAGCATTATTAAGGTTGAGGCTAGGGATTGATCTGGCGGCTTGCTTCAA
GCAGTTGCATGCAGTTTGGCGGTCAGGTGTGGTTCTGGCGGCAGCGTTGA
GAGACCTGACGCCGTTGCAGCATGGCATAGGTATAGGGCCGCCCGATCTC
AAGAAACCGATGCATGGTGCCAATGAGCCACTCACCTGCCCACATGTTAT
GGCCTGAGCACTCAGGGGACCAGTCACCAACATGCACAGAACCAAAGCTG
AAACAAGCTTGAGGGCAGCCATTTGAGATTTCTCCTGAGATTTT
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