CF835381

Overview
NameCF835381
Unique NameCF835381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:959..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.425e-31
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 3
Query:   30 ALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            +LKL   ++LCM+V  PL+  A+T GQV+ SL PCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.425e-31
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 3
Query:   30 ALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGP--IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            +LKL   ++LCM+V  PL+  A+T GQV+ SL PCI +LR  G   +P  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A+GLPG CGV+IPYKIS STDC+ V+
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.220e-30
Identity = 61/107 (57.01%), Postives = 80/107 (74.77%), Query Frame = 3
Query:   51 LLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRS--GGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            ++  +L T P +   +TCGQV+G+L PC+G+LRS    P+P+ CCN VR LN AARTT D++TAC CLKQ A ++  LNLN AAGLP  CGV+IPYKIS +TDC++V
Sbjct:   13 VMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.220e-30
Identity = 61/114 (53.51%), Postives = 83/114 (72.81%), Query Frame = 3
Query:   33 LKLVSALLLCMLVTGPLSAQA-ITCGQVSGSLPPCIGFLRSGGP-IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            +KL   +  CM+V GP+++ A ++CG VSG + PCIG+L    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.899e-30
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = 3
Query:   36 KLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   ++LCM+V  P  A+AITCGQV+ +L PC+ +LR+ GP+   CC GV++L  +ARTT DRQ AC CLK AA +I  +NL  AAGLP  CGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.945e-30
Identity = 56/91 (61.54%), Postives = 72/91 (79.12%), Query Frame = 3
Query:   96 ITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            ITCGQVS +L PCI +++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ + SIP +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.435e-30
Identity = 62/118 (52.54%), Postives = 80/118 (67.80%), Query Frame = 3
Query:   21 QMAALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNN--AAGLPGACGVSIPYKISTSTDCSKVR 368
            Q+  L  + A++ CM V GP +  A++CGQV  +L PCI ++ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA   IP  N N   AAGLPG CGV+IPYKIS STDC  ++
Sbjct:    6 QLLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.439e-29
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 3
Query:   33 LKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            + ++   + CM+ +    A AI+CGQV+  L PC G+L +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +NLNNA  LPG CG+SI YKI+ + DCSK+
Sbjct:    6 MNVLCVAVACMVFSASY-ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.205e-29
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   24 MAALKLVS-ALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            MA  +LV  AL+  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.205e-29
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   24 MAALKLVS-ALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            MA  +LV  AL+  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CF835381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP2_GOSHI3.425e-3154.78Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI3.425e-3154.78Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_DAUCA2.220e-3057.01Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTPD_BRAOT2.220e-3053.51Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP1_TOBAC2.899e-3057.66Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_PRUDO4.945e-3061.54Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP3_PRUDU8.435e-3052.54Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP_GERHY1.439e-2953.15Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP1_ORYSJ3.205e-2955.65Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI3.205e-2955.65Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835381 ID=CF835381; Name=CF835381; organism=Citrus sinensis; type=EST; length=623bp
GAAAATCTCAGCAGTAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCT
TTGCTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAAC
ATGTGGGCAGGTGAGTGGCTCATTGCCACCATGCATCGGTTTCTTGAGAT
CGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAAC
GCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAA
GCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTC
TTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACT
GACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGT
TTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGT
CCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGC
CCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAG
TTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTA
ACAACTTAAAAAAAAAAAAAAAA
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