CF835381

Overview
NameCF835381
Unique NameCF835381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:959..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.895e-28
Identity = 59/111 (53.15%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   36 KLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   +LLCM+V  P  A+A+TCGQV+  L PC+ +L+  GP+   CC GV+ L  +A+TT DR+TAC CLK AA +I  ++LN AAG+P  C V+IPYKIS STDCS V+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 3
Query:   30 ALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            AL+  + L+L + +   + A AI+CG V+GSL PC  +L  GG +P  CC GV++LN+ A+TTPDRQ AC C++  A+SI  LN + A+GLPG CGVSIPY IS ST+C+ ++
Sbjct:    4 ALRFFTCLVLTVCIVASVDA-AISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   27 AALKLVSALLLCMLVTGPLSAQA-ITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            A L LV+ +   +L+ GP +  A I+CGQV+ ++ PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.031e-27
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   27 AALKLVSALLLCMLVTGPLSAQA-ITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            A L LV+ +   +L+ GP +  A I+CGQV+ ++ PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:    4 AQLVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.347e-27
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 3
Query:   36 KLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   +LLCM+V  P  A+A+TCGQV+ +L PC+ +L + GP+   CC GV+ L   A+TT DRQTAC CLK AA S   L+L  AA LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.759e-27
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   24 MAALKLVS-ALLLCMLVTGPLSAQA-ITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            MA  +LV  AL+  +L+ GP +  A I+CGQV+ ++ PC+ + R G      CC+GVRSLN+AA TT DR+TACNCLK  A SI  LN  NAA +P  CGVSIPY IS S DCS V
Sbjct:    1 MARAQLVLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.684e-27
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 3
Query:   27 AALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            A +K   AL++CM+V  PL A+AITCG V+  L PCIG+L+        CC G++SLN+AA +  DR+TAC CLK AA SI  +N   AA LP  CGVS+PY IS +T+C+ +
Sbjct:    5 AFVKFTCALVMCMMVAAPL-AEAITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAI 116          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.729e-27
Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 3
Query:   36 KLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            K+   +LLCM+V  P  A+A+TCGQV+ +L PC+ +L + GP+   CC GV+ L   A+TT DRQ AC CLK AA S   L+L  AA LP  C V+IPYKIS STDCSKV+
Sbjct:    6 KIACFVLLCMVVVAP-HAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKVQ 114          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.945e-26
Identity = 61/114 (53.51%), Postives = 81/114 (71.05%), Query Frame = 3
Query:   33 LKLVSALLLCMLVTGPLSAQA-ITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            LKL + +++CMLVT P++++A I+CG V+GSL  C  +L  GG IP  CC+GV+ LN+ ARTT DRQ AC C++ AAR++ S LN   AA LPGAC V I Y IS  T+C+ VR
Sbjct:    5 LKLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.540e-26
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   96 ITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            ++CG V+  L PCI +LRS GP+P+ CCNGV++L  +A TT DR+TAC CL  A++SI  +N   AAGLPG CGV+IPYKIS ST+C +V
Sbjct:    1 LSCGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQV 90          
The following BLAST results are available for this feature:
BLAST of CF835381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_SOLPN7.895e-2853.15Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP3_ARATH1.031e-2750.44Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_ORYSI1.031e-2753.51Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ1.031e-2753.51Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP2_SOLPN1.347e-2754.95Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLT2B_ORYSJ1.759e-2754.31Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP_BETVU6.684e-2750.44Non-specific lipid-transfer protein OS=Beta vulgar... [more]
NLTP2_SOLCI8.729e-2754.05Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP5_ARATH1.945e-2653.51Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP5_VITSX2.540e-2657.78Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835381 ID=CF835381; Name=CF835381; organism=Citrus sinensis; type=EST; length=623bp
GAAAATCTCAGCAGTAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCT
TTGCTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAAC
ATGTGGGCAGGTGAGTGGCTCATTGCCACCATGCATCGGTTTCTTGAGAT
CGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAAC
GCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAA
GCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTC
TTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACT
GACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGT
TTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGT
CCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGC
CCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAG
TTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTA
ACAACTTAAAAAAAAAAAAAAAA
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