CF835381

Overview
NameCF835381
Unique NameCF835381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10926 contig Csv1_Contig10926:959..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.647e-23
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 3
Query:   18 SQMAALKLVS-ALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLR-SGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            ++ AA +LV  A++  ML+    +  AI+CGQVS +L PCI + R +G   P+ CC+GV+ L  AA++T D+Q AC C+K AA     LN   AAG+P  CGVS+PY IS S DCSK+R
Sbjct:    2 ARAAATQLVLVAMVAAMLIVA--TDAAISCGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAGG---LNAGKAAGIPSMCGVSVPYAISASVDCSKIR 115          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.704e-22
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   27 AALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPM-PCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            A + L++  L+ ML   P +A AI CG V   + PC+ +++ GGP P   CC+GV++L+  AR+  DRQ+ACNCLK  AR I +LN +NA  +P  CGV++PY IS + DCS+V
Sbjct:    1 AQVMLMAVALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQ-GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.957e-22
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 3
Query:   36 KLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            K+++ L++  +     +   I CG V+ +L  C+ +L + GP+P  CC GV+SL   A+TTPDR+  C CLK A + I  LN +  A LP  CGVSIPY IS ST+C  +
Sbjct:    6 KIITCLIVLTIYMASPTESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLKLAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSJ (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.460e-21
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   24 MAALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            MA + LV+  ++   V    ++ A++CG V+ S+ PC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:    8 MALVALVA--VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP3_ORYSI (Non-specific lipid-transfer protein 3 OS=Oryza sativa subsp. indica GN=LTP110-A PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.460e-21
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 3
Query:   24 MAALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            MA + LV+  ++   V    ++ A++CG V+ S+ PC+ ++      P   CC+GVR+LN  A ++ DR+TAC+CLK  A S  +LN+ NAA +P  CGVS+ + ISTS DCSK+
Sbjct:    8 MALVALVA--VVAAAVVAERASAAVSCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRNLNMGNAASIPSKCGVSVAFPISTSVDCSKI 120          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.480e-21
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 3
Query:   33 LKLVSALLLCMLVTGPLSAQA-ITCGQVSGSLPPCIGFLRSGG---PIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPY--KISTSTDCS 359
            +KL   + + ++  GP++A+A ++CG+V+ +L PC G+L +GG   P P  CCNGVR LN    TT DR+ AC C+K AAR++ P LN + AAG+P  CG+ IPY  +I  +T C+
Sbjct:    5 MKLGCLVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQ-CCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.595e-20
Identity = 52/117 (44.44%), Postives = 70/117 (59.83%), Query Frame = 3
Query:   18 SQMAALKLVSALLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMP-CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 365
            +++A + LV+A+LL        +  AITCGQVS +L PC  + +  G  P   CC+GV+ L   AR+T D+Q  C CLK  A +    N   AAG+P  CGVS+PY IS S DCSK+
Sbjct:    7 TKLALVALVAAMLLVA------ADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGAY---NAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.927e-19
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 3
Query:   51 LLLCMLVTGPLSAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQA--ARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            L +C+++       A++C  V   L PC+ ++  GGP+P  CCNG+ +L + A+T+ DRQ  C C+K A    ++    + NA  LP  CGV +PYK S STDC  ++
Sbjct:    6 LAVCLVLALHCGEAAVSCNTVIADLYPCLSYVTQGGPVPTLCCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLTLSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.699e-19
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   51 LLLCMLVTGPL---SAQAITCGQVSGSLPPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAAR--SIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            L LC+L+       S  AI+C  V  +L PC+ ++  GG IP  CCNG+R L+  A +  D+Q  C C+K      S  S+ L  AA LPG CGV +PYKI  ST+C+ ++
Sbjct:    6 LPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CF835381 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.407e-18
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 3
Query:   93 AITCGQVSGSLPPCIGFLRSGGPIPMP--CCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 368
            A+TC  V+ +L PC+ +L+  G  P P  CC GVRSL AAA+T  DR+ ACNC+K AA+   SLN   AA L   CGV + Y +S + +C+ V+
Sbjct:    1 AVTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYKVAARLASQCGVRMSYSVSPNVNCNSVQ 94          
The following BLAST results are available for this feature:
BLAST of CF835381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLT42_HORVU7.647e-2347.90Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLTP1_WHEAT1.704e-2246.49Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTPC_ARATH4.957e-2242.73Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP3_ORYSJ2.460e-2142.61Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP3_ORYSI2.460e-2142.61Non-specific lipid-transfer protein 3 OS=Oryza sat... [more]
NLTP7_ARATH5.480e-2144.83Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP8_HORVU1.595e-2044.44Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTP6_ARATH3.927e-1937.96Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPA_ARATH6.699e-1941.44Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP_AMACA7.407e-1846.81Non-specific lipid-transfer protein OS=Amaranthus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C09_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835381 ID=CF835381; Name=CF835381; organism=Citrus sinensis; type=EST; length=623bp
GAAAATCTCAGCAGTAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCT
TTGCTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAAC
ATGTGGGCAGGTGAGTGGCTCATTGCCACCATGCATCGGTTTCTTGAGAT
CGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAAC
GCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAA
GCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTC
TTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACT
GACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGT
TTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGT
CCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGC
CCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAG
TTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTTGTGTTCAGTTTA
ACAACTTAAAAAAAAAAAAAAAA
back to top