CF835382

Overview
NameCF835382
Unique NameCF835382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9673 contig Csv1_Contig9673:155..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 77/202 (38.12%), Postives = 115/202 (56.93%), Query Frame = 2
Query:   47 LVAIGGSESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 652
            +V+ G  +S+  + +  L   +P++KT I G+ + G L  GN NGLL+       EL  LR      + V+ + ++L+A+GN I  ND+ AL +  L  E + II + L VEV   ++AG  +VGS  + +NRG LVHP  S E+LD +  +L VP   GTVNRG +++GA +  N      G+ TT  EL+ I+ VF L E
Sbjct:   25 IVSPGLQDSYLKSIKETLN--VPIIKTPICGSNLAGALMAGNSNGLLISPYVFSHELDVLREH---DINVEIMPDKLTAIGNIIVANDNGALVNPSLSDEAKRIIKNTLEVEVVETSIAGLDIVGSLVAATNRGALVHPDASEEELDLVEDVLGVPAEIGTVNRGVKLVGACIIANSNGVIVGNKTTGPELARIDQVFNLFE 221          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 73/172 (42.44%), Postives = 102/172 (59.30%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            VV+  + G R++G L  GN  G+LLP    D+E++ +R +L + V V  +  R +ALGN I CND   LA   L++E  + ++D LGVEV   +VAG   VGS    +NRGGL HP  S E+L  LS + +VP  AGT+N G E +  GL  N + A  G DTT  E++ I+
Sbjct:   56 VVRLRVLGMRLVGVLTTGNSRGILLPEGV-DREVELVRKAL-EGVEVGIVPTRSNALGNVIVCNDRACLASPGLEKEALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVFKVPFEAGTINFGVEFVRTGLVANSYGALVGEDTTGPEIARIQ 225          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.982e-26
Identity = 52/88 (59.09%), Postives = 72/88 (81.82%), Query Frame = 2
Query:  386 FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLR 649
            FR ++A N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  IG+GL VNDW AFCG +TTATE++V+E +F+LR
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVNDWAAFCGLNTTATEITVVERIFQLR 91          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 68/181 (37.57%), Postives = 102/181 (56.35%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 652
            + VV+T I G+ ++G L  GN NG LLP+ ++ +E+Q  R  +P  +    + +RL+A+GN +  ND  AL H  L     EIIA  L VEV+R T+AG   VG     +N+G LVHP  ++ + + L  +  +P+  GT N G++++G+GL  N      GS+TT  EL  IE      E
Sbjct:   44 VRVVETLINGSTVVGALSRGNSNGFLLPYGSSVEEMQK-RTGVPAGI----LPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIEEALGFLE 219          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.894e-26
Identity = 71/181 (39.23%), Postives = 99/181 (54.70%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLR 649
            + V++T I    I G +  GN NGLLLP     +EL +LR  + D+V ++ +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL  ND  A  G +TT  EL  I+   +LR
Sbjct:   44 VEVIETKIADMIINGVMIAGNDNGLLLPRIVKPEELDYLREHIGDKVRLEILEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGLVANDHGALVGDETTGPELMRIQQALRLR 224          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.133e-25
Identity = 67/177 (37.85%), Postives = 100/177 (56.50%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVV---VQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +PVV+ S+  +RIIG L  GN N +++P    D EL+ ++N+  +  +   V   + + +ALGN I  ND  AL  +   RE  + I D+LGVEV R  +AG + VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+ +  N +    G  TT  E+  IE
Sbjct:   45 VPVVEASLMKSRIIGVLGAGNSNAIIVPWYVWDSELEKIKNAFREYGIDTEVVPFQTKYTALGNLILTNDKGALVSSKFSREEAKKIGDILGVEVERGVIAGIVAVGSAGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPYVGSCMLANSYGVVVGHLTTGPEIVKIE 221          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.133e-25
Identity = 65/179 (36.31%), Postives = 99/179 (55.31%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            + VV+T++ G+ ++G L   N NG L P    + E++ +R      V V  +  +++A+GN +  NDH AL H  LD    E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +G G+ VN   A  G DTT  EL+ +E    L
Sbjct:   45 VEVVRTTVAGSNLVGALLAVNSNGALFPRHAREHEIRVVREL---GVEVDVLPSKMNAVGNLVLTNDHGALVHPDLDDHALEVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVNSKGAVVGEDTTGPELARLEDALYL 220          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.306e-25
Identity = 71/207 (34.30%), Postives = 105/207 (50.72%), Query Frame = 2
Query:   20 FSKLTNAFCLVAIGGSESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            F   T+   L+  G  E      +  L   +PV++ S+  +RIIG L  GN N ++LP    D E++ ++ +L +  +   +     + +ALGN I  ND  AL      R+  + I ++LGVEV R  +AG   VGS    +N+GGLVHP TS E+L+ LS L +V +  GT N G   +G  +  N      G  TT  E+  IE
Sbjct:   17 FGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIE 221          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.344e-25
Identity = 66/177 (37.29%), Postives = 95/177 (53.67%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE---ERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +P+++TSI  +RI+G    GN N +++P    D EL+H++N L +  +  RIE     L+A GN I  ND  AL      RE  + + D+LGVEV R  +     VGS    +NRGGLVHP  + E+L+ L  L +V +  GT N G   +G+ +  N      G  TT  E+  IE
Sbjct:   45 VPLIETSIMKSRIVGVFAAGNSNAIVVPWYIWDAELEHIQNELNELDIDMRIEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGSVGVVTNRGGLVHPEATDEELEWLRDLFKVDIYVGTANMGVPFVGSCMLANSHGVVVGHLTTGPEIVKIE 221          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.592e-25
Identity = 74/212 (34.91%), Postives = 105/212 (49.53%), Query Frame = 2
Query:   20 FSKLTNAFCLVAIGGSESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            F   T+   LV  G  E      +  L   +PV++ SI  +RIIG L  GN N +L+P    D E++ ++++  +  +   I     + +ALGN I  ND  AL      R+  + I D+LGVEV R  +AG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +G  +  N      G  TT  E+  IE    L
Sbjct:   17 FGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226          
The following BLAST results are available for this feature:
BLAST of CF835382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METST2.881e-2938.12Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_AERPE6.419e-2942.44Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_TRYCR2.982e-2659.09Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_METMA3.894e-2637.57Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_HYPBU3.894e-2639.23Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_PYRFU1.133e-2537.85Translation initiation factor 6 OS=Pyrococcus furi... [more]
IF6_METKA1.133e-2536.31Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_PYRHO4.306e-2534.30Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_THEON7.344e-2537.29Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_PYRAB9.592e-2534.91Translation initiation factor 6 OS=Pyrococcus abys... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835382 ID=CF835382; Name=CF835382; organism=Citrus sinensis; type=EST; length=676bp
TTCGTGTGAGGTTGCTTTTTTTTCCAAGCTCACTAATGCTTTTTGCTTGG
TCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTCAAGCGGAGTTA
GCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTAT
CGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAA
CCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTT
GTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGC
ATGCAATGACCATGTTGCTCTTGCACACACATATCTTGACAGGGAAACGG
AGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTT
GCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGG
CTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACAC
TCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTG
ATAGGTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGA
CACCACGGCAACCGAACTCTCTGTTATTGAGAGCGTTTTCAAGTTGAGGG
AAGCTCAACCAAATGCCATTGTGGAT
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