CF835382

Overview
NameCF835382
Unique NameCF835382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9673 contig Csv1_Contig9673:155..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL +   +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL +   +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL +   +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL +   +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +++  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL +   +   E+II + LGVE + R  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LLEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.612e-22
Identity = 70/190 (36.84%), Postives = 107/190 (56.32%), Query Frame = 2
Query:   95 ELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            E+++V+    ++T+IGG+ ++G L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL    L ++ ++ I D L VEV   T+A    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA +  N   A  G DTT  EL +IE    L
Sbjct:   39 EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.600e-22
Identity = 62/181 (34.25%), Postives = 96/181 (53.04%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 652
            + V++T + G+ ++G L  GN NG +LP+     E+Q   +     + V  + +RL+A+GN +  ND  AL H  L  +  E IA  L V+V+R T+AG   VG     +N+G LVHP  +  + + L  +   P+  GT N G++++G+GL  N      GS+TT  EL  IE      E
Sbjct:   44 VRVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIEEALGFLE 218          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 70/215 (32.56%), Postives = 102/215 (47.44%), Query Frame = 2
Query:   11 VAFFSKLTNAFCLVAIGGSESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREA 655
            V  F++ T+   L+     +       AEL   IP V T+IGG+  +G L  GN+NG+L+    T +E + +  +    V V  +  R++A GN I  ND+ A  H  L  E  E I   L V V R  +A    VG+    +NRG L HP     +L+ +   L V    GTVN G+ ++G+G+         G DTT  EL+ IE      E+
Sbjct:   12 VGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGIVAGQTGYVVGEDTTGPELTRIEDTLGYLES 222          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.693e-21
Identity = 57/177 (32.20%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVF 640
            +   + S+ G R++G    GN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +A   L +   + IAD LGVE  + ++     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G DTT  E+  ++ +F
Sbjct:   46 VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDTTGHEMMQLQRIF 221          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.211e-21
Identity = 63/209 (30.14%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   11 VAFFSKLTNAFCLVAIGGSESFYSTFQAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV 637
            +  ++K  +    + +   E   + FQ  L   + V + SI  + +IG + V N NGL++P+ +    L  L     D   V +++++++A+GN I  NDH A+ H      + + I D LGVE  R T+   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA +  N      G DTT  E+  I+ V
Sbjct:   13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDL-----DGRNVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVANSKGVLVGKDTTPIEMDRIDDV 214          
The following BLAST results are available for this feature:
BLAST of CF835382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_SULIL1.173e-2238.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIM2.000e-2238.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIK2.000e-2238.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIA2.000e-2238.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULSO2.612e-2238.15Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_METJA2.612e-2236.84Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_METAC7.600e-2234.25Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_HALWD1.296e-2132.56Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_THEPD1.693e-2132.20Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_THEAC2.211e-2130.14Translation initiation factor 6 OS=Thermoplasma ac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835382 ID=CF835382; Name=CF835382; organism=Citrus sinensis; type=EST; length=676bp
TTCGTGTGAGGTTGCTTTTTTTTCCAAGCTCACTAATGCTTTTTGCTTGG
TCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTCAAGCGGAGTTA
GCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTAT
CGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAA
CCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTT
GTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGC
ATGCAATGACCATGTTGCTCTTGCACACACATATCTTGACAGGGAAACGG
AGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTT
GCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGG
CTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACAC
TCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTG
ATAGGTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGA
CACCACGGCAACCGAACTCTCTGTTATTGAGAGCGTTTTCAAGTTGAGGG
AAGCTCAACCAAATGCCATTGTGGAT
back to top