CF835382

Overview
NameCF835382
Unique NameCF835382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9673 contig Csv1_Contig9673:155..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.903e-18
Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646
            IP  + +I  + +IG LCVGN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +    L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   +GA +  N   A  G DT+  E+  IE    L
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANIKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 2
Query:  116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            V K SIG + +IG +   N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + ++AG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  +GA +  N      G  TT+ EL  I+
Sbjct:   46 VYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSIELGRID 213          
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METS3 (Translation initiation factor 6 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eif6 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15
Identity = 50/174 (28.74%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631
            +  VK+SI G  +IG L V N NG+++     D+E++         + V  I    +A+GN +A ND  A+   +L  E  ++I D L V V   ++ G+ ++GS  + +N+G L+  + +  ++D    +  V    GTV RG  ++GA    N   A    ++T  E++ +E
Sbjct:   44 VDAVKSSISGCNLIGSLAVANSNGIVVSPHVLDREVKQFEEL---GLNVATIPGNYTAVGNIVAANDTGAIVSPFLSDEAVKVIEDTLDVNVESTSMVGSDIIGSLITVTNKGFLMDKNATETEVDFARDVFGVEGDIGTVGRGISLVGACSLANSSGAIVAKESTGPEMARVE 214          
The following BLAST results are available for this feature:
BLAST of CF835382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METM53.903e-1834.97Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_PICTO1.483e-1733.14Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_METS33.093e-1528.74Translation initiation factor 6 OS=Methanobrevibac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C10_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835382 ID=CF835382; Name=CF835382; organism=Citrus sinensis; type=EST; length=676bp
TTCGTGTGAGGTTGCTTTTTTTTCCAAGCTCACTAATGCTTTTTGCTTGG
TCGCAATTGGAGGTTCTGAGAGCTTCTACAGCACATTTCAAGCGGAGTTA
GCAGATGTTATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTAT
CGGGCGGCTTTGTGTTGGTAACAAAAATGGGCTTCTCTTGCCACACACAA
CCACAGACCAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTT
GTTGTCCAGCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGC
ATGCAATGACCATGTTGCTCTTGCACACACATATCTTGACAGGGAAACGG
AGGAAATTATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTT
GCCGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGG
CTTGGTCCACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACAC
TCTTGCAAGTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTG
ATAGGTGCTGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGTCAGA
CACCACGGCAACCGAACTCTCTGTTATTGAGAGCGTTTTCAAGTTGAGGG
AAGCTCAACCAAATGCCATTGTGGAT
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