CF835382
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.903e-18 Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 2 Query: 110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 646 IP + +I + +IG LCVGN NGLL+P TT++E++ ++ L + V ++R++ + +A GN I N+ + L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG +GA + N A G DT+ E+ IE L Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANIKGAVVGGDTSGPEILKIEEALDL 225
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17 Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 2 Query: 116 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631 V K SIG + +IG + N NG+++ D + +L++ + + I +L+A GN I NDH AL H + I DVLGVE + ++AG VGS ++RG LV +++ LS L ++ + GT N GS +GA + N G TT+ EL I+ Sbjct: 46 VYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSIELGRID 213
BLAST of CF835382 vs. ExPASy Swiss-Prot
Match: IF6_METS3 (Translation initiation factor 6 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=eif6 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.093e-15 Identity = 50/174 (28.74%), Postives = 88/174 (50.57%), Query Frame = 2 Query: 110 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTYLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 631 + VK+SI G +IG L V N NG+++ D+E++ + V I +A+GN +A ND A+ +L E ++I D L V V ++ G+ ++GS + +N+G L+ + + ++D + V GTV RG ++GA N A ++T E++ +E Sbjct: 44 VDAVKSSISGCNLIGSLAVANSNGIVVSPHVLDREVKQFEEL---GLNVATIPGNYTAVGNIVAANDTGAIVSPFLSDEAVKVIEDTLDVNVESTSMVGSDIIGSLITVTNKGFLMDKNATETEVDFARDVFGVEGDIGTVGRGISLVGACSLANSSGAIVAKESTGPEMARVE 214 The following BLAST results are available for this feature:
BLAST of CF835382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835382 ID=CF835382; Name=CF835382; organism=Citrus sinensis; type=EST; length=676bpback to top |