CF835383

Overview
NameCF835383
Unique NameCF835383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835383_ssr72 microsatellite CF835383_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1104 contig Csv1_Contig1104:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.637e-27
Identity = 55/108 (50.93%), Postives = 81/108 (75.00%), Query Frame = -3
Query:  311 FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNA---IVDEMRKSLID 625
            FR ++A N LVGSY   +N+G +VHP T  +D+DE+++LLQVP+VAGT+NRG+  IG+GL VNDW AFCG +TTATE++V+E +F+LR         ++ ++R +L+D
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVNDWAAFCGLNTTATEITVVERIFQLRRDLGGGRANLLQQLRDTLVD 111          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_METST (Translation initiation factor 6 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=eif6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  359 ETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 667
            E + II + L VEV   ++AG  +VGS  + +NRG LVHP  S E+LD +  +L VP   GTVNRG +++GA +  N      G+ TT  EL+ I+ VF L E
Sbjct:  119 EAKRIIKNTLEVEVVETSIAGLDIVGSLVAATNRGALVHPDASEEELDLVEDVLGVPAEIGTVNRGVKLVGACIIANSNGVIVGNKTTGPELARIDQVFNLFE 221          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_AERPE (Translation initiation factor 6 OS=Aeropyrum pernix GN=eif6 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.134e-15
Identity = 43/96 (44.79%), Postives = 57/96 (59.38%), Query Frame = -3
Query:  380 ETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 667
            E  + ++D LGVEV   +VAG   VGS    +NRGGL HP  S E+L  LS + +VP  AGT+N G E +  GL  N + A  G DTT  E++ I+
Sbjct:  130 EALKTVSDTLGVEVVEGSVAGVYTVGSAIVVTNRGGLAHPDASEEELKFLSDVFKVPFEAGTINFGVEFVRTGLVANSYGALVGEDTTGPEIARIQ 225          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.414e-14
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = -3
Query:  374 EIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV 658
            +++ADVLGVEV   T+AGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VND  A  G +T   EL  ++ V
Sbjct:  124 KVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVGDETAGPELMRMQQV 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.157e-13
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  374 EIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESV 658
            +++ADVLGVEV   T+AGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VND  A  G +T   E   I+ V
Sbjct:  124 KVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVGDETAGPEFMRIQQV 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_METBF (Translation initiation factor 6 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=eif6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = -3
Query:  359 EIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 658
            E+IA  L VEV+R T+AG   VG     +N+G LVHP  +  +++ L  L ++P+  GT N G++++G+GL  N      GSDTT  EL  IE      E
Sbjct:  120 EVIASTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEIETLEKLFELPVNIGTTNFGTQMLGSGLLANSKNYLAGSDTTGPELGRIEEALGFLE 219          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = -3
Query:  380 ETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 667
            E  + I D+LGVEV R  +AG + VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   +G+ +  N +    G  TT  E+  IE
Sbjct:  126 EEAKKIGDILGVEVERGVIAGIVAVGSAGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPYVGSCMLANSYGVVVGHLTTGPEIVKIE 221          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.068e-12
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = -3
Query:  380 EIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 658
            E+I+ VLGV+V R T+AG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ +G+GL  N      GS+TT  EL  +E
Sbjct:  119 EVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLANSKGYVAGSNTTGHELGRVE 211          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_METKA (Translation initiation factor 6 OS=Methanopyrus kandleri GN=eif6 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  365 EIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 658
            E+I  VLG  V R  + G   VGS    +++G +VHP  + E+++ +S +L V +  GTVNRGS  +G G+ VN   A  G DTT  EL+ +E    L
Sbjct:  123 EVIESVLGGRVVRGELGGVKTVGSAGVANSKGAVVHPGATEEEMERVSEVLGVDVEVGTVNRGSPYVGVGIVVNSKGAVVGEDTTGPELARLEDALYL 220          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.063e-12
Identity = 39/100 (39.00%), Postives = 56/100 (56.00%), Query Frame = -3
Query:  359 EIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 658
            EIIA  L VEV+R T+AG   VG     +N+G LVHP  ++ + + L  +  +P+  GT N G++++G+GL  N      GS+TT  EL  IE      E
Sbjct:  120 EIIARTLKVEVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTVSEREALEEIFGLPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIEEALGFLE 219          
The following BLAST results are available for this feature:
BLAST of CF835383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF6_TRYCR7.637e-2750.93Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_METST5.134e-1543.69Translation initiation factor 6 OS=Methanosphaera ... [more]
IF6_AERPE5.134e-1544.79Translation initiation factor 6 OS=Aeropyrum perni... [more]
IF6_PYRAE7.414e-1443.16Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_PYRAR2.157e-1342.11Translation initiation factor 6 OS=Pyrobaculum ars... [more]
IF6_METBF3.679e-1340.00Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_PYRFU4.068e-1240.63Translation initiation factor 6 OS=Pyrococcus furi... [more]
IF6_METBU4.068e-1241.94Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_METKA5.313e-1239.80Translation initiation factor 6 OS=Methanopyrus ka... [more]
IF6_METMA9.063e-1239.00Translation initiation factor 6 OS=Methanosarcina ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835383 ID=CF835383; Name=CF835383; organism=Citrus sinensis; type=EST; length=669bp
CTCGAGNTTTTTCTTTTTAGGGTTTTGGGCGATTTATGAATATCATTATA
TCCCCTGTCGTCTTTCAAAATATACATACATACAGACATAATTGTCACCT
TCAGAAAGCGGGCAGCCAAGTTAAGCAGGCAACAGTGAAATACAGAGTTT
GTGAGCAAGGATTTCATGTAATCGAGTATTGCTCAAGCTACTACGTACTC
CAACATGAGAAAGAAAACATTCTAATAGCTCTCAAGAAAGTTAGGAAATA
GTGTTTCACACAATAAGACAAAACACAAGACTGCTTATCCCAGATAACTT
AGACATAGCTGTCAATTAAAGATTTCCTCATCTCATCCACAATGGCATTT
GGTTGAGCTTCCCTCAACTTGAAAACGCTCTCAATAACAGAGAGTTCGGT
TGCCGTGGTGTCTGACCCACAGAATGCTGTCCAGTCATTCACAGTTAACC
CAGCACCTATCACTTCACTTCCACGGTTCACAGTGCCAGCAACCAAAGGT
ACTTGCAAGAGTGTAGAGAGTTCATCCAAGTCTTCAATGGATGTATGAGG
GTGGACCAAGCCACCCCTGTTGCTGAAGGAACAGTAACTGCCAACAAGGA
TATTACCGGCAACTGTCTGCCTAAAAACTTCTACTCCAAGAACATCTGCA
ATAATTTCCTCCGTTTCCC
back to top