CF835383

Overview
NameCF835383
Unique NameCF835383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835383_ssr72 microsatellite CF835383_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1104 contig Csv1_Contig1104:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = -3
Query:  359 ETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 667
            E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++G GL VND     G+ T+  EL  +E VF   E
Sbjct:  118 EVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVNDTGYLAGNATSGFELGRVEDVFGFLE 220          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  380 EEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 661
            E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:  124 EKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  380 EEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 661
            E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:  124 EKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  380 EEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 661
            E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:  124 EKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = -3
Query:  380 IADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 652
            I ++LGVEV R  +AG   VGS    +N+GGLVHP TS E+L+ LS L +V +  GT N G   +G  +  N      G  TT  E+  IE
Sbjct:  131 IGEILGVEVERGVIAGLHAVGSAGVVTNKGGLVHPETSDEELEWLSDLFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIE 221          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = -3
Query:  365 IADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 652
            I D+LGVEV R  +AG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +G  +  N      G  TT  E+  IE    L
Sbjct:  131 IGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  380 EEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 661
            E+II + LGVE + R  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:  124 EKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  380 EEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 661
            E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:  124 EKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  380 EEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 661
            E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:  124 EKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CF835383 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.672e-11
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  380 EEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIE 661
            E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:  124 EKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
The following BLAST results are available for this feature:
BLAST of CF835383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF6_METB61.184e-1136.89Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_SULIY4.498e-1144.21Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIN4.498e-1144.21Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIL4.498e-1144.21Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_PYRHO5.874e-1142.86Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_PYRAB5.874e-1141.67Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_SULSO7.672e-1144.21Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_SULIM7.672e-1144.21Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIK7.672e-1144.21Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIA7.672e-1144.21Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01C10_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835383 ID=CF835383; Name=CF835383; organism=Citrus sinensis; type=EST; length=669bp
CTCGAGNTTTTTCTTTTTAGGGTTTTGGGCGATTTATGAATATCATTATA
TCCCCTGTCGTCTTTCAAAATATACATACATACAGACATAATTGTCACCT
TCAGAAAGCGGGCAGCCAAGTTAAGCAGGCAACAGTGAAATACAGAGTTT
GTGAGCAAGGATTTCATGTAATCGAGTATTGCTCAAGCTACTACGTACTC
CAACATGAGAAAGAAAACATTCTAATAGCTCTCAAGAAAGTTAGGAAATA
GTGTTTCACACAATAAGACAAAACACAAGACTGCTTATCCCAGATAACTT
AGACATAGCTGTCAATTAAAGATTTCCTCATCTCATCCACAATGGCATTT
GGTTGAGCTTCCCTCAACTTGAAAACGCTCTCAATAACAGAGAGTTCGGT
TGCCGTGGTGTCTGACCCACAGAATGCTGTCCAGTCATTCACAGTTAACC
CAGCACCTATCACTTCACTTCCACGGTTCACAGTGCCAGCAACCAAAGGT
ACTTGCAAGAGTGTAGAGAGTTCATCCAAGTCTTCAATGGATGTATGAGG
GTGGACCAAGCCACCCCTGTTGCTGAAGGAACAGTAACTGCCAACAAGGA
TATTACCGGCAACTGTCTGCCTAAAAACTTCTACTCCAAGAACATCTGCA
ATAATTTCCTCCGTTTCCC
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