CF835577
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.692e-22 Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = -1 Query: 309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 803 ++ S+AP + ++LSV+E+T+S F+ +++ DPR G+Y+ ++RG V + +V ++ K + FV+W P + PP P +A ++NST + E+F R +F LM+ +RAF+HWY GEGM+ EF+EA + L +Y Sbjct: 270 LMPSFAPFYDPKARTFQRLSVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESNTQDLISEY 426
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.591e-22 Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = -1 Query: 309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800 + +AP+ S + L+VAE+T F+ +MMA DPRHG Y+ ++RG + ++V+ + I+ K + F DW P K + PP ++ +V N+T+V E+ R+ +F + ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 267 MPGFAPLTSQGSQQYRALTVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 421
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.591e-22 Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S + L+V E+T ++ +MM DPRHG+Y+ M+RG + K+V+ + ++ K + FV+W P K + PP ++ A I NS+S+ E+F R M+ ++AF+HWY EGM+E EF+E ++ L +Y Sbjct: 66 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNMNDLVSEY 218
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.279e-21 Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = -1 Query: 309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791 +AP+ S ++V E+T ++P +MM D R+G+Y+ ++RG V K+V + ++ K FV+W P + + PP ++ + + NST++ E+F R+ +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 271 FAPLTSRGAYSFRVVTVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 423
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.205e-19 Identity = 46/165 (27.88%), Postives = 88/165 (53.33%), Query Frame = -1 Query: 309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 803 ++ +AP+++ ++ + +V+E+ F ++++ D R GK + ++RG + P++V+ + ++ K FVDW P K I PP ++ + I N+T++ +F R+ M ++A +HWY GEGMEE EF +A+++L A+ DY Sbjct: 265 LIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPP--------RGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAIIDDY 421
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14 Identity = 48/166 (28.92%), Postives = 83/166 (50.00%), Query Frame = -1 Query: 309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAALEKDY 803 ++SS P+ + + ++ + AF + + DP+H Y+AC LM RG+V D+ + +K ++QFV W G+K + PP ++ ++N+T V F + +F +Y K+A +H Y+ EGMEE F+EA L+AL ++Y Sbjct: 299 LVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEY 454
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14 Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = -1 Query: 309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAALEKDY 803 ++SS P+ + + ++ + AF + + DPRH Y+AC L+ RG+V D+ + +K +QFV W G+K + PP ++ ++N+T V F + +F +Y K+A +H Y+ +GMEE F+EA L+AL ++Y Sbjct: 299 LVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEY 454
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13 Identity = 44/173 (25.43%), Postives = 91/173 (52.60%), Query Frame = -1 Query: 309 MLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAALEKDY 803 +++S+ P VI + ++ SV ++ +P ++M C + G Y++ + RGDV P D++ ++ I+ K+ + F+ W P + ++ Q P A V V CM++N +++ +F+RI +D++ + AF++ Y E ++ EF +A+E + L ++Y Sbjct: 268 LMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNLIEEY 431
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12 Identity = 45/167 (26.95%), Postives = 85/167 (50.90%), Query Frame = -1 Query: 309 MLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME-EGEFSEAREDLAALEKDY 803 +++ Y P+ I + + SV ++ +P ++M + GKY++ + +GDV P ++ ++ I+ KR F+DW P + ++ + P + ++ + M++N TSV +FS I ++D + K+AF+ Y E E EF ARE L L ++Y Sbjct: 266 LITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGPASIQIALSKKSPYIKSSHKVSGL-----MLANHTSVNHLFSHIIQQYDKVRKKQAFLANYTRESGEILQEFDIAREMLDDLVQEY 427
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12 Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = -1 Query: 309 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 578 FV+W P K + PP ++ + I NST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y Sbjct: 3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 84 The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 380
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bpback to top |