CF835577

Overview
NameCF835577
Unique NameCF835577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:900..1696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.692e-22
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = -1
Query:  309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 803
            ++ S+AP    +    ++LSV+E+T+S F+  +++   DPR G+Y+    ++RG V   +   +V  ++ K +  FV+W P      +   PP   P        +A   ++NST + E+F R   +F LM+ +RAF+HWY GEGM+  EF+EA  +   L  +Y
Sbjct:  270 LMPSFAPFYDPKARTFQRLSVSELTSSLFDKKNLLVASDPRFGRYLTAACIFRGKVSSHEAENSVMQLQRKNSNLFVEWIPDNVSVSLCSVPPVGQP--------QAAVALANSTCMQELFKRNLDQFALMFKRRAFLHWYTGEGMDVMEFTEAESNTQDLISEY 426          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.591e-22
Identity = 53/164 (32.32%), Postives = 89/164 (54.27%), Query Frame = -1
Query:  309 LSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 800
            +  +AP+ S     +  L+VAE+T   F+  +MMA  DPRHG Y+    ++RG +  ++V+  +  I+ K +  F DW P   K  +   PP          ++ +V    N+T+V E+  R+  +F   + ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  267 MPGFAPLTSQGSQQYRALTVAELTQQMFDAKNMMAARDPRHGCYLTAAAIFRGRMPMREVDEQMFNIQDKNSSYFADWLPNNIKTAVCDIPPW--------GLKMSVTFTGNNTAVQEL-KRVSEQFTATFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 421          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.591e-22
Identity = 51/161 (31.68%), Postives = 85/161 (52.80%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   I NS+S+ E+F R       M+ ++AF+HWY  EGM+E EF+E   ++  L  +Y
Sbjct:   66 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNMNDLVSEY 218          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.279e-21
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = -1
Query:  309 YAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 791
            +AP+ S        ++V E+T   ++P +MM   D R+G+Y+    ++RG V  K+V   +  ++ K    FV+W P   +  +   PP          ++ +   + NST++ E+F R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:  271 FAPLTSRGAYSFRVVTVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 423          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.205e-19
Identity = 46/165 (27.88%), Postives = 88/165 (53.33%), Query Frame = -1
Query:  309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 803
            ++  +AP+++ ++    + +V+E+    F  ++++   D R GK +    ++RG + P++V+  +  ++ K    FVDW P   K  I   PP          ++ +   I N+T++  +F R+      M  ++A +HWY GEGMEE EF +A+++L A+  DY
Sbjct:  265 LIPGFAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPP--------RGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQELQAIIDDY 421          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14
Identity = 48/166 (28.92%), Postives = 83/166 (50.00%), Query Frame = -1
Query:  309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAALEKDY 803
            ++SS  P+ +          + ++ + AF     + + DP+H  Y+AC LM RG+V   D+   +  +K   ++QFV W   G+K  +   PP             ++  ++N+T V   F  +  +F  +Y K+A +H Y+  EGMEE  F+EA   L+AL ++Y
Sbjct:  299 LVSSLTPLYTLTDVNIPPRRLDQMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSLSALIQEY 454          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.698e-14
Identity = 47/166 (28.31%), Postives = 82/166 (49.40%), Query Frame = -1
Query:  309 MLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDLAALEKDY 803
            ++SS  P+ +          + ++ + AF     + + DPRH  Y+AC L+ RG+V   D+   +  +K    +QFV W   G+K  +   PP             ++  ++N+T V   F  +  +F  +Y K+A +H Y+  +GMEE  F+EA   L+AL ++Y
Sbjct:  299 LVSSLTPLYTLADVNIPPRRLDQMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSLSALIQEY 454          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.749e-13
Identity = 44/173 (25.43%), Postives = 91/173 (52.60%), Query Frame = -1
Query:  309 MLSSYAP-VISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAV--CMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDLAALEKDY 803
            +++S+ P VI   +   ++ SV ++     +P ++M  C  + G Y++   + RGDV P D++ ++  I+ K+ + F+ W P   +  ++ Q P        A V   V  CM++N +++  +F+RI   +D++  + AF++ Y       E ++  EF +A+E +  L ++Y
Sbjct:  268 LMTSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETITNLIEEY 431          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 45/167 (26.95%), Postives = 85/167 (50.90%), Query Frame = -1
Query:  309 MLSSYAPV-ISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME-EGEFSEAREDLAALEKDY 803
            +++ Y P+ I  +     + SV ++     +P ++M     + GKY++   + +GDV P  ++ ++  I+ KR   F+DW P   +  ++ + P +     ++ +     M++N TSV  +FS I  ++D +  K+AF+  Y  E  E   EF  ARE L  L ++Y
Sbjct:  266 LITGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGPASIQIALSKKSPYIKSSHKVSGL-----MLANHTSVNHLFSHIIQQYDKVRKKQAFLANYTRESGEILQEFDIAREMLDDLVQEY 427          
BLAST of CF835577 vs. ExPASy Swiss-Prot
Match: TBB_LYMST (Tubulin beta chain (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12
Identity = 33/90 (36.67%), Postives = 51/90 (56.67%), Query Frame = -1
Query:  309 FVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 578
            FV+W P   K  +   PP          ++ +   I NST++ E+F RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y
Sbjct:    3 FVEWIPNNVKTAVCDIPPR--------GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 84          
The following BLAST results are available for this feature:
BLAST of CF835577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
TBB2_SUIBO2.692e-2232.12Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBB4Q_HUMAN4.591e-2232.32Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB3_ANEPH4.591e-2231.68Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBB_AJECA2.279e-2130.43Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBBP_DROME6.205e-1927.88Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBE_HUMAN1.582e-1428.92Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE2.698e-1428.31Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_RETFI1.749e-1325.43Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG_DICDI4.307e-1226.95Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBB_LYMST9.596e-1236.67Tubulin beta chain (Fragment) OS=Lymnaea stagnalis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835577 ID=CF835577; Name=CF835577; organism=Citrus sinensis; type=EST; length=803bp
TTTTTTTAGACAACCCCCGAAGCTATGTTGTAAATTGAAATAAGATAACC
CTATAAAAATCAAACAGTCAAAGATTACATGAACATATACCTTCCATAAA
CTTGATAAGCATAACAAATTTCAACAAGCTTTGAAATTGAGCGAGAATCA
AAGAGAGGAATAAGGTTTTCAACACAAAATAAAGGCACGAAGCGTCACTA
AAGCACAAGACATCATACTAAAACGCACAGATAATTGCACACTTAGATCC
CTCAGTCCTCCTCACCATAATCTTCCTCGCCCTCGGCAGACTCTGCACCC
ACCTCCTCATAATCCTTCTCAAGGGCAGCAAGATCCTCACGAGCCTCAGA
GAACTCTCCTTCTTCCATACCCTCGCCAACATACCAGTGGACGAAAGCAC
GCTTTGCATACATAAGATCAAACTTGTGGTCAATGCGAGAGAACACCTCT
GCCACACTGGTGGAGTTGGAGATCATGCAAACAGCCCTCTGCACCTTGGC
AAGGTCACCACCAGGAACAACAGTTGGTGGCTGGTAGTTGATACCACACT
TGAACCCAGTCGGGCACCAGTCGACGAATTGGATTGTACGCTTGGTCTTG
ATGGTAGCAACAGCTGCATTGACATCCTTGGGCACAACATCACCACGGTA
CATGAGGCAGCAAGCCATGTACTTGCCATGACGAGGATCACATTTGGCCA
TCATAGATGAGGGCTCAAAGGCACTGTTGGTGATCTCAGCAACTGAGAGT
TGTTCATGGTAGGCCTTCTCAGCTGAGATGACTGGTGCATAGGAGGAAAG
CAT
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