CF835585

Overview
NameCF835585
Unique NameCF835585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5197 contig Csv1_Contig5197:513..1295. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.289e-29
Identity = 65/140 (46.43%), Postives = 96/140 (68.57%), Query Frame = -1
Query:  229 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 621
            AAG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.871e-29
Identity = 65/142 (45.77%), Postives = 96/142 (67.61%), Query Frame = -1
Query:  229 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 627
            S  AG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  223 STEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362          
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.275e-26
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = -1
Query:  226 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 627
            S   G   L FLR+ PQFQ LR +VQ NPQ+L+ +LQ++G+ +P L + I ++   FL+L+ E   G EG       G+    IQ+T EE E+I+RL  +GFDR IV++ + AC+KNEELAANYL +H HE ED
Sbjct:  239 SNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366          
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RAD23_DICDI (UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.799e-22
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = -1
Query:  247 GSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLD 630
            G G +G    + LRN P F +LR  +  NP ++  +LQ+L + NP LVR IQE+  +F+RL       G+GN G         ++QVT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct:  217 GGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQ-----GDGNPGGNPGQF---TLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337          
BLAST of CF835585 vs. ExPASy Swiss-Prot
Match: RAD23_YEAST (UV excision repair protein RAD23 OS=Saccharomyces cerevisiae GN=RAD23 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.700e-11
Identity = 55/176 (31.25%), Postives = 84/176 (47.73%), Query Frame = -1
Query:  244 DLFPQGLP--DVGSGAAGA--GSLDFLRNSPQFQV---------LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------GDQLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL-DH 660
            DLF Q     +  SGA G   G+ D  +  P   +         LR +V  NP+ L P+L+ +  + PQL   I  +   F+ ++ E V        +G +  +        G+  A  + Q        +  TPE+ +AI RL  +GF+R +V++V+FAC+KNEE AAN L  DH
Sbjct:  221 DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396          
The following BLAST results are available for this feature:
BLAST of CF835585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23A_HUMAN1.289e-2946.43UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN2.871e-2945.77UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RHP23_SCHPO2.275e-2647.76UV excision repair protein rhp23 OS=Schizosaccharo... [more]
RAD23_DICDI5.799e-2243.41UV excision repair protein RAD23 homolog OS=Dictyo... [more]
RAD23_YEAST2.700e-1131.25UV excision repair protein RAD23 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I09_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835585 ID=CF835585; Name=CF835585; organism=Citrus sinensis; type=EST; length=786bp
TTTTTTTTTTTTTTTTTATGAGAAATTGAAGAATGTCCCTTTTTGCATTA
CTTGTTCACTCTCCACACATACCAAAGCATGAAATATCTGAACTTTGTTT
AACAAATGAAGTCGAGGAGAAATGAGAAGGGAAAGAAACTAATTAGAGGT
ATTTTTTAATAAATGCCGTCCAAAGGTAGTAACCATCATTTTCACCTTGA
ATCTTTTCTATTCCCCCTTCAATCAATCCTCAAACTCATGCATATGGTCT
AAAAGGTAGTTGGCAGCAAGTTCCTCATTCTTGTTGCAGGCAAAGAACAC
CTCCAATACAATTGCTCGATCAAAGCCCATTGCCTCAAGACGTTCTATGG
CTTCACGTTCTTCGGGCGTGACTTGTATTGACTGTGGCATTAACCCAGCA
AGCTGGTCCCCCAAATTCCCCTCACCACCTTGAACAGGTTCATTGATAAG
CCGAAGGAAGTCAGCCTGATGTTCCTGAATAAGCCTCACTAGCTGAGGAT
TTTGTTTCCCCAACTCTTGAAGCATGGGCTGCAATAATTGAGGATTTGCC
TGCACCATAGCTCGCAAAACTTGAAACTGTGGACTATTACGTAAAAAGTC
AAGACTGCCAGCGCCAGCTGCACCTGAACCCACGTCAGGAAGGCCCTGAG
GAAAGAGGTCCAAAGGATTTGCATTTGGCCCACTAGAAGTAACGGGTGCC
GGTTGGGTTGGCTGTGGCATCTGAGTTGGAGAGTTAGCAGCTTGTCCATT
ACCAGGGGCGCGGGCCACAGGTTGAACTTCAGCTTG
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