CF835592

Overview
NameCF835592
Unique NameCF835592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3618 contig Csv1_Contig3618:92..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: QOR_LEIAM (Probable quinone oxidoreductase OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.342e-16
Identity = 67/202 (33.17%), Postives = 95/202 (47.03%), Query Frame = 1
Query:  106 IPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGK-VCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGG 708
            +P+      VRV VK   +N ++     G Y +    PF  G + +GTV  +G  V+N KVGD V      G FA+F+ A      PVP+       + LPV+  T+ VAL    ++  G                 Q+ K V G T+I      EK +FLKS+G DHV++   ES+   + E       KGVDV+Y+ VGG
Sbjct:   30 LPEEVPEGMVRVSVKYAGVNASDLNFTNGSYFKNVQPPFDCGFEAAGTVVQIGAGVANVKVGDHVV-LMQYGCFAEFLDAPAERCIPVPELKP--EYSVLPVSALTAAVALGEVGRVKKGDVALVTAAAGGTGQIAVQLLKHVYGCTVIGTCSSEEKAEFLKSIGCDHVINYKTESLDGRLHELCP----KGVDVVYECVGG 224          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: VAT1_MOUSE (Synaptic vesicle membrane protein VAT-1 homolog OS=Mus musculus GN=Vat1 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.995e-16
Identity = 56/209 (26.79%), Postives = 89/209 (42.58%), Query Frame = 1
Query:   82 ILLSKTEPIPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGG 708
            + L     +P       + +RV+A  LN+A+ +   G Y   PPLP  PG + +G V AVG  V + K GD V      G + + +    ++ F +P+      AAAL V + T+++ L     L  G                 Q+ +      +     A K + LK  GV H +D      +  +K+       KGVD++ DP+GG
Sbjct:   75 VKLQSRPAVPPAPGPGQLTLRVRACGLNFADLMGRQGLYDRLPPLPVTPGMEGAGVVVAVGEGVGDRKAGDRVMVLNRSGMWQEEVTVPSAQTFLMPEAMTFEEAAALLVNYITAYMVLFDFGNLRPGHSVLVHMAAGGVGMAALQLCRTVENVTVFGTASASKHEVLKENGVTHPIDYHTTDYVDEIKKI----SPKGVDIVMDPLGG 279          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTU (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis GN=pks2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 57/193 (29.53%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  133 VRVRVKATSLNYANYLQILGKYQE-KPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGG 708
            + V V+A+S+N+A+ L   G+Y   +  LP + G+D++G V AVGP V++ KVGD V G +  G +  F+  D      +P G     AAA+  A  T+   L   A++ +G                  I +  GA I A A   ++ + L+++G++HV D  +      ++     R   GVDV+ + V G
Sbjct: 1456 IEVAVRASSVNFADVLIAFGRYPSFEGHLPQL-GTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGR---GVDVVLNSVTG 1644          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: PHAS_MYCTA (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=pks2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 57/193 (29.53%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  133 VRVRVKATSLNYANYLQILGKYQE-KPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGG 708
            + V V+A+S+N+A+ L   G+Y   +  LP + G+D++G V AVGP V++ KVGD V G +  G +  F+  D      +P G     AAA+  A  T+   L   A++ +G                  I +  GA I A A   ++ + L+++G++HV D  +      ++     R   GVDV+ + V G
Sbjct: 1456 IEVAVRASSVNFADVLIAFGRYPSFEGHLPQL-GTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGR---GVDVVLNSVTG 1644          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBP (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pks2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 57/193 (29.53%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  133 VRVRVKATSLNYANYLQILGKYQE-KPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGG 708
            + V V+A+S+N+A+ L   G+Y   +  LP + G+D++G V AVGP V++ KVGD V G +  G +  F+  D      +P G     AAA+  A  T+   L   A++ +G                  I +  GA I A A   ++ + L+++G++HV D  +      ++     R   GVDV+ + V G
Sbjct: 1456 IEVAVRASSVNFADVLIAFGRYPSFEGHLPQL-GTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGR---GVDVVLNSVTG 1644          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBO (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis GN=pks2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.218e-16
Identity = 57/193 (29.53%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  133 VRVRVKATSLNYANYLQILGKYQE-KPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGG 708
            + V V+A+S+N+A+ L   G+Y   +  LP + G+D++G V AVGP V++ KVGD V G +  G +  F+  D      +P G     AAA+  A  T+   L   A++ +G                  I +  GA I A A   ++ + L+++G++HV D  +      ++     R   GVDV+ + V G
Sbjct: 1456 IEVAVRASSVNFADVLIAFGRYPSFEGHLPQL-GTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGR---GVDVVLNSVTG 1644          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: VAT1_HUMAN (Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16
Identity = 54/190 (28.42%), Postives = 84/190 (44.21%), Query Frame = 1
Query:  139 VRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGG 708
            +R++A  LN+A+ +   G Y   PPLP  PG + +G V AVG  VS+ K GD V      G + + +     + F +P+      AAAL V + T+++ L     L  G                 Q+ +      +     A K + LK  GV H +D      +  +K+       KGVD++ DP+GG
Sbjct:   81 LRLRACGLNFADLMARQGLYDRLPPLPVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTASASKHEALKENGVTHPIDYHTTDYVDEIKKI----SPKGVDIVMDPLGG 266          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: QOR_PIG (Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 56/199 (28.14%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  103 PIPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAAL-GSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYD 696
            PIP+ N    V ++V A  +N  +     G +  KP LP+ PG D +G V+AVG +VS+FK GD V   + L G +A++ +A    ++ +P+  D    AA+ + + T+ +AL+H A + +G+                QI +  G  ++  A   E    +   G   V +    + I  +K   K+   KG+DV+ +
Sbjct:   31 PIPKDNQ---VLIKVHACGVNPVDTYIRSGTHNMKPLLPYTPGLDVAGIVEAVGEHVSSFKKGDRVFTVSTLSGGYAEYALAADDTVYMLPEKLDFKQGAAIGIPYFTACLALLHSACVKAGEIVLIHGASGGVGIAACQIARAYGLKVLGTAGTEEGQNIVLQNGAHEVFNHREVNYIDKIK---KSVGEKGIDVIIE 223          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: QOR_LAMGU (Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 55/199 (27.64%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  103 PIPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAAL-GSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYD 696
            PIP+ +    V ++V+A  +N  +     G Y  KP LP+ PG D +G ++AVG  VS FK GD V   + + G +A++ +A    ++ +P   D    AA+ V + T++ AL+H A   +G+                QI + C   ++  A   E  + +   G   V +   +  I  +K   K+   KG+DV+ +
Sbjct:   31 PIPEEHQ---VLIKVQACGVNPVDTYIRSGTYSRKPRLPYTPGLDVAGLIEAVGERVSAFKKGDRVFTTSTVSGGYAEYALAADHTVYKLPGELDFQKGAAIGVPYFTAYRALLHSACAKAGESVLVHGASGGVGLAACQIARACCFKVLGTAGTEEGQRVVLQNGAHEVFNHREDINIDKIK---KSVGEKGIDVIIE 223          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: QOR_BOVIN (Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 55/199 (27.64%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  103 PIPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVCGFAAL-GSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYD 696
            PIP+ +    V ++V+A  +N  +     G +  KP LP+ PG D +G ++AVG +VS FK GD V     + G +A++ +A    ++ +P+  D    AA+ + + T++ AL+H A +  G+                QI +  G  ++  A   E  K +   G   V +      I  +K   K+   KGVDV+ +
Sbjct:   31 PIPKDHQ---VLIKVQACGVNPVDTYIRSGTHNIKPLLPYTPGFDVAGIIEAVGESVSAFKKGDRVFTTRTISGGYAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVKPGESVLVHGASGGVGIAACQIARAYGLKVLGTASTEEGQKIVLENGAHKVFNHKEADYIDKIK---KSVGEKGVDVIIE 223          
The following BLAST results are available for this feature:
BLAST of CF835592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
QOR_LEIAM2.342e-1633.17Probable quinone oxidoreductase OS=Leishmania amaz... [more]
VAT1_MOUSE3.995e-1626.79Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
PHAS_MYCTU5.218e-1629.53Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCTA5.218e-1629.53Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBP5.218e-1629.53Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBO5.218e-1629.53Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
VAT1_HUMAN8.901e-1628.42Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
QOR_PIG7.535e-1528.14Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 ... [more]
QOR_LAMGU2.192e-1427.64Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE... [more]
QOR_BOVIN4.884e-1427.64Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835592 ID=CF835592; Name=CF835592; organism=Citrus sinensis; type=EST; length=711bp
TTGACTCGAACCCCGTTGGAGGCACTGGTGTGCAGGAAACTGGGCGATCC
AACCCTCTCAATTCACGATGAAAAATCGCCGATTCTGTTGAGTAAAACTG
AGCCAATTCCACAATTGAATTCTTCAACTGCAGTTAGAGTCAGAGTGAAA
GCCACCAGCTTGAACTACGCTAATTACTTGCAGATATTGGGGAAATATCA
AGAGAAACCACCATTGCCCTTCGTCCCCGGCTCCGATTATTCGGGCACTG
TTGATGCGGTGGGCCCCAATGTCTCAAATTTCAAAGTGGGTGACACTGTT
TGTGGATTTGCTGCCCTTGGCTCCTTTGCCCAATTCATCGTCGCTGATCA
GTCAGAATTGTTTCCAGTGCCAAAGGGATGTGATTTGTTGGCTGCTGCTG
CACTTCCTGTTGCATTTGGAACCTCACATGTTGCTCTTGTTCATCGGGCC
CAATTGTCCTCCGGTCAGGTCTTGCTTGTTCTTGGTGCTGCTGGAGGTGT
TGGTGTTGCCGCTGTTCAAATTGGCAAGGTTTGCGGAGCCACTATCATTG
CCGTTGCTAGGGGTGCTGAAAAGATAAAATTTTTGAAGTCATTGGGCGTC
GATCATGTAGTTGACTTGAGCAATGAGAGTGTCATTCCGAGTGTCAAAGA
GTTCCTCAAGGCAAGGAAACTCAAAGGGGTTGATGTTCTGTATGATCCTG
TTGGAGGCAAG
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