CF835592

Overview
NameCF835592
Unique NameCF835592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3618 contig Csv1_Contig3618:92..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: YGD6_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe GN=SPBC1773.06c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 61/210 (29.05%), Postives = 85/210 (40.48%), Query Frame = 1
Query:   61 IHDEKSPILLSKTEP--IPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDT-VCGF---------------AALGS-----FAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALV--HRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIKFLKSLGVDHVVD 615
            +HDE S     K E   +PQ  +   V V++KA SLNY + +   G Y     LP VPGSD +G ++ VG +V  F+ GD+ VC F               +ALG      F ++ V     L   PK       A LP A  T+   L      Q+  G                 Q     GA +   +   EK++F K LG  H ++
Sbjct:    7 VHDEISGFDQLKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVVCNFFTNYLDGTPTDFATHSALGGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGN-NVLVLGTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTIN 215          
BLAST of CF835592 vs. ExPASy Swiss-Prot
Match: MECR_RAT (Trans-2-enoyl-CoA reductase, mitochondrial OS=Rattus norvegicus GN=Mecr PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 68/221 (30.77%), Postives = 94/221 (42.53%), Query Frame = 1
Query:   64 HDEKSPILLSKTEPIPQLNSSTAVRVRVKATSLNYANYLQILGKYQEKPPLPFVPGSDYSGTVDAVGPNVSNFKVGDTVC-GFAALGSFAQFIVADQSELFPVPKGCDLLAAAALPVAFGTSHVALVHRAQLSSGQXXXXXXXXXXXXXXXXQIGKVCGATIIAVARGAEKIK----FLKSLGVDHVVDLSNESVIPSVKEFLKARKLKGVDVLYDPVGGK 711
            H + + ++  K   +  +  S  V V++ A  +N ++   I G Y   P LP V G++  G V AVG +VS  K GD V    A LG++    V  +  L  VPK   L +AA L V   T++  LV   QL  G                 QI    G   I V R    IK     LK LG D+V+    E  +P  K   K   L  + +  + VGGK
Sbjct:   51 HGDPAKVIQLKNLELTAVEGSD-VHVKMLAAPINPSDINMIQGNYGLLPKLPAVGGNEGVGQVIAVGSSVSGLKPGDWVIPANAGLGTWRTEAVFSEEALIGVPKDIPLQSAATLGVNPCTAYRMLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLTDRLKDLGADYVL-TEEELRMPETKNIFKDLPLPRLAL--NCVGGK 267          
The following BLAST results are available for this feature:
BLAST of CF835592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
YGD6_SCHPO8.621e-1129.05Zinc-type alcohol dehydrogenase-like protein C1773... [more]
MECR_RAT8.621e-1130.77Trans-2-enoyl-CoA reductase, mitochondrial OS=Ratt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835592 ID=CF835592; Name=CF835592; organism=Citrus sinensis; type=EST; length=711bp
TTGACTCGAACCCCGTTGGAGGCACTGGTGTGCAGGAAACTGGGCGATCC
AACCCTCTCAATTCACGATGAAAAATCGCCGATTCTGTTGAGTAAAACTG
AGCCAATTCCACAATTGAATTCTTCAACTGCAGTTAGAGTCAGAGTGAAA
GCCACCAGCTTGAACTACGCTAATTACTTGCAGATATTGGGGAAATATCA
AGAGAAACCACCATTGCCCTTCGTCCCCGGCTCCGATTATTCGGGCACTG
TTGATGCGGTGGGCCCCAATGTCTCAAATTTCAAAGTGGGTGACACTGTT
TGTGGATTTGCTGCCCTTGGCTCCTTTGCCCAATTCATCGTCGCTGATCA
GTCAGAATTGTTTCCAGTGCCAAAGGGATGTGATTTGTTGGCTGCTGCTG
CACTTCCTGTTGCATTTGGAACCTCACATGTTGCTCTTGTTCATCGGGCC
CAATTGTCCTCCGGTCAGGTCTTGCTTGTTCTTGGTGCTGCTGGAGGTGT
TGGTGTTGCCGCTGTTCAAATTGGCAAGGTTTGCGGAGCCACTATCATTG
CCGTTGCTAGGGGTGCTGAAAAGATAAAATTTTTGAAGTCATTGGGCGTC
GATCATGTAGTTGACTTGAGCAATGAGAGTGTCATTCCGAGTGTCAAAGA
GTTCCTCAAGGCAAGGAAACTCAAAGGGGTTGATGTTCTGTATGATCCTG
TTGGAGGCAAG
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