CF835595
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32 Identity = 75/170 (44.12%), Postives = 108/170 (63.53%), Query Frame = -2 Query: 171 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKED----AMKWFQVKYEGV 665 ++PMR+ ++ K+ +NI VGESG+RLT+A +LEQL GQ P+ +A+ T R FGIRR E IA VT+RG+KA Q+L+ L+ + +L NF + G F FGIQEHI++ G++YDP GI+GMD V LE +H++TKE+ AM+ + K EG+ Sbjct: 14 AHPMRKPRIAKVTINIGVGESGERLTKAETMLEQLVGQKPIRRRAKQTNRDFGIRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVAKRKRQRRKIPTKHKLTKEEGIVFAMEELKAKVEGL 183
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.803e-30 Identity = 68/163 (41.72%), Postives = 103/163 (63.19%), Query Frame = -2 Query: 180 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 665 ++PMR ++QK+ +NI VGESG+RLT+A +L++L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L +Y+L +F + G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 17 AHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29 Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = -2 Query: 189 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQ 662 NPMR++K+ K+ +NI +GESGDRL +A ++L++L+G PV++ ++ T+R FGIR+ ++I VT+RG +A + L L+ Y L + +F D G FGI EH+ L G +YDP GI+GMD + LE +HRVTKE+AM++ + Sbjct: 14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29 Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = -2 Query: 153 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAM----KWFQVKYEGVILNKSQ 662 NPM + +++K+V+N VGESGDRLT+ A+V+E+L+GQ P+ ++A+ T SFGIR+ I VT+RG KA + L++ + + E L +F D G F FGI EHID G KYDP GI+GMD V LE +HR+T+E+A+ K F VK E V+L + + Sbjct: 10 NPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29 Identity = 68/163 (41.72%), Postives = 101/163 (61.96%), Query Frame = -2 Query: 180 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 665 ++PMR +++K+ +NI VGESG+RLT+A +L+QL+GQ P+ KA+ T R FGIRR E IA VT+RG KA +LL+ L + L +F + G FGI+EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 17 AHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 9.057e-29 Identity = 67/163 (41.10%), Postives = 101/163 (61.96%), Query Frame = -2 Query: 180 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 665 ++PMR+ +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+GMD V LE +H++TKE+ M + ++ Sbjct: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28 Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = -2 Query: 201 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXGIQHRVTKEDAM 662 +PMR ++ K+ +NIS+G+SG+RL RAA+VLE+L+GQ PVF KA+ T+R+FG+R+ E IA VT+RG+KA+ L+ L + + + + G FGI+EHI + G+KYDP GI GMD + ++ +HRVT+E+ M Sbjct: 25 SPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28 Identity = 66/168 (39.29%), Postives = 104/168 (61.90%), Query Frame = -2 Query: 165 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVIL 665 SNPMR+ +V K+ +NI VGESGDRL +A ++L++L+GQ PV+++A+ T SFGIRR + I V +R ++A++ L+ L + EL F + G FG++EHI L G++YDP GI+GMD V LE +HR+TKE+ + + + +++ +L Sbjct: 18 SNPMRKPRVGKVTVNIGVGESGDRLQKAYELLQELTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.001e-27 Identity = 68/171 (39.77%), Postives = 100/171 (58.48%), Query Frame = -2 Query: 159 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKYEGVILNK 659 PM++ ++QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T +FGIR+ I VT+RG KA + L+ + K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181
BLAST of CF835595 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27 Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = -2 Query: 180 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXGIQHRVTKEDAMKWFQVKY 668 +SNPMR KV+K+V+++ VGESG L A +LE ++GQT V S A+ T+ +F I++ E I C VT+RG+ A LE+ L + E L F G FG++EH D G++YDP+ GI+GMD VV+ H++TKED + +F+ KY Sbjct: 1 MSNPMRNPKVEKVVVHMGVGESGQHLVDAEGILETITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGYRVSKRRIAKRKIPTSHKITKEDTISFFKDKY 164 The following BLAST results are available for this feature:
BLAST of CF835595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835595 ID=CF835595; Name=CF835595; organism=Citrus sinensis; type=EST; length=705bpback to top |