CF835596

Overview
NameCF835596
Unique NameCF835596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:22..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_ARCFU (50S ribosomal protein L5P OS=Archaeoglobus fulgidus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 71/159 (44.65%), Postives = 99/159 (62.26%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 556
            NPMRE+ + K+V+NI VGESG+R  +A  +LE+L  Q P  + A+ T+++FGIR+ E I   VT+RG+KA++ L+  L VKE  L R++  + G F FGI EHIDL G+ YDP  GI+GMD  V L+                   HRVTKED ++W +
Sbjct:   14 NPMREVVLDKVVINIGVGESGERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEAIGIKVTLRGEKALKFLKDALTVKENRLSRKSIGE-GYFAFGIAEHIDLPGVDYDPDVGIFGMDVCVSLKRRGYRVARRRRKKAKIATSHRVTKEDTIRWLE 171          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.564e-30
Identity = 68/163 (41.72%), Postives = 103/163 (63.19%), Query Frame = 2
Query:   80 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565
            ++PMR  ++QK+ +NI VGESG+RLT+A  +L++L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +Y+L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   17 AHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRARIPTRHKLTKEEGMLYMMEEF 179          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 556
            NPMR++K+ K+ +NI +GESGDRL +A ++L++L+G  PV++ ++ T+R FGIR+ ++I   VT+RG +A + L   L+   Y L + +F D G   FGI EH+ L G +YDP  GI+GMD  + LE                  +HRVTKE+AM++ +
Sbjct:   14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRISRRRRKKAKIPKRHRVTKEEAMEFLR 172          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.265e-29
Identity = 75/178 (42.13%), Postives = 107/178 (60.11%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAM----KWFQVKYEGVILNKSQ 592
            NPM + +++K+V+N  VGESGDRLT+ A+V+E+L+GQ P+ ++A+ T  SFGIR+   I   VT+RG KA + L++  +  + E   L   +F D G F FGI EHID  G KYDP  GI+GMD  V LE                  +HR+T+E+A+    K F VK E V+L + +
Sbjct:   10 NPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRVKRRKRCRAKIPRRHRLTREEAIEFIEKTFGVKVERVLLEEEE 187          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 68/163 (41.72%), Postives = 101/163 (61.96%), Query Frame = 2
Query:   80 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565
            ++PMR  +++K+ +NI VGESG+RLT+A  +L+QL+GQ P+  KA+ T R FGIRR E IA  VT+RG KA +LL+  L   +  L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   17 AHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.608e-29
Identity = 67/163 (41.10%), Postives = 101/163 (61.96%), Query Frame = 2
Query:   80 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565
            ++PMR+ +++K+ +NI VGESG+RLT+A  +LE+L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +  L   +F + G   FGI EHI++ G++YDP  GI+GMD  V LE                  +H++TKE+ M +   ++
Sbjct:   17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRVARRKRKRAKIPTRHKLTKEEGMVYMMEEF 179          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.918e-28
Identity = 65/156 (41.67%), Postives = 98/156 (62.82%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-XXXXXXXXXXXXXXXXXIQHRVTKEDAM 544
            +PMR  ++ K+ +NIS+G+SG+RL RAA+VLE+L+GQ PVF KA+ T+R+FG+R+ E IA  VT+RG+KA+  L+  L    + +   +  + G   FGI+EHI + G+KYDP  GI GMD  + ++                   +HRVT+E+ M
Sbjct:   25 SPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRIVERRRQRRGHIPRRHRVTREETM 180          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.287e-28
Identity = 66/168 (39.29%), Postives = 104/168 (61.90%), Query Frame = 2
Query:   80 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 580
            SNPMR+ +V K+ +NI VGESGDRL +A ++L++L+GQ PV+++A+ T  SFGIRR + I   V +R ++A++ L+  L   + EL    F + G   FG++EHI L G++YDP  GI+GMD  V LE                  +HR+TKE+ + + + +++  +L
Sbjct:   18 SNPMRKPRVGKVTVNIGVGESGDRLQKAYELLQELTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRVMRRRRCRRPVPRRHRLTKEEGIVFMEEEFDVEVL 185          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.517e-28
Identity = 68/171 (39.77%), Postives = 100/171 (58.48%), Query Frame = 2
Query:   86 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 586
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG KA + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E                  +H VTK++A+++ Q K++  ++ +
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGYRVKSRKVKRSHIPEKHLVTKDEAIEYIQAKFDTEVVRE 181          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.243e-27
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 2
Query:   77 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565
            +SNPMR  KV+K+V+++ VGESG  L  A  +LE ++GQT V S A+ T+ +F I++ E I C VT+RG+ A   LE+ L + E  L    F   G   FG++EH D  G++YDP+ GI+GMD  VV+                    H++TKED + +F+ KY
Sbjct:    1 MSNPMRNPKVEKVVVHMGVGESGQHLVDAEGILETITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGYRVSKRRIAKRKIPTSHKITKEDTISFFKDKY 164          
The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL5_ARCFU1.086e-3144.6550S ribosomal protein L5P OS=Archaeoglobus fulgidu... [more]
RL5_PYRHO4.564e-3041.7250S ribosomal protein L5P OS=Pyrococcus horikoshii... [more]
RL5_SULSO2.265e-2940.8850S ribosomal protein L5P OS=Sulfolobus solfataric... [more]
RL5_METJA2.265e-2942.1350S ribosomal protein L5P OS=Methanocaldococcus ja... [more]
RL5_PYRFU2.959e-2941.7250S ribosomal protein L5P OS=Pyrococcus furiosus G... [more]
RL5_PYRAB8.608e-2941.1050S ribosomal protein L5P OS=Pyrococcus abyssi GN=... [more]
RL5_AERPE1.918e-2841.6750S ribosomal protein L5P OS=Aeropyrum pernix GN=r... [more]
RL5_METKA7.287e-2839.2950S ribosomal protein L5P OS=Methanopyrus kandleri... [more]
RL5_METMP9.517e-2839.7750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METBU1.243e-2740.2450S ribosomal protein L5P OS=Methanococcoides burt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835596 ID=CF835596; Name=CF835596; organism=Citrus sinensis; type=EST; length=685bp
CCGTCTCCGTCCTCTTATATACTGAGCAGCGGCAGTAACTCATCATCAGC
AACCTTTAATGGCTTCAGAGAATAAACTTTCGAACCCCATGAGGGAAATT
AAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGATCG
TCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACCTG
TTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTAAT
GAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCT
TTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGAAATT
TCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTT
GGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATTTCTTTGT
GGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGCCGCCGTAGGTGCAAGT
CTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAATGAAATGG
TTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGAATATTGG
TGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGTTGATGTT
TGTAGACACTGGCTATTACTTGGCGTTTTGCAAAC
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