CF835596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23 Identity = 64/165 (38.79%), Postives = 96/165 (58.18%), Query Frame = 2 Query: 83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGV 574 +PM++I ++K+VLN+ VG+SGD + A++ LEQ+SG+ P A+ T R +G+R+ E I VT+RGD A LL+ L+ K + R F + G + FGI+EHID+ G+KY+PS GI G+ V L H +T ++A K + VK GV Sbjct: 7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGIRTRSKHKASVGKSHIITSQEA-KDYLVKEFGV 170
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23 Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 2 Query: 83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454 NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G + A+ ++R F IR+ I VT+R AM+ L+ VK+Y++ +F G FGI ++ D G+KYDP GI+GMD +V Sbjct: 2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIV 126
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23 Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 2 Query: 104 VQKLVLNISVGESGDRLTRAAKVLEQLS-GQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKW 550 V K+V+++ VGE+G+RL A ++ L+ G P+ S AR T+ +FGIR+ + I C T+RG KAM LE LK E L R F TG FGFGI+EH D G YDP GIYGMD V+E + V +E++MK+ Sbjct: 9 VAKVVVHMGVGEAGERLVNAENIMADLTKGAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22 Identity = 60/164 (36.59%), Postives = 89/164 (54.27%), Query Frame = 2 Query: 86 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565 PM + +++K+ +N+ VGESGD+L A KV+ +++GQ PV + A+ T +F IR+ I +T+RG KA + L+ + +L +F G F FGI EHID KYDPS GIYGMD V E +H V+KE+A+ + + Y Sbjct: 11 PMSKPRIEKVTVNMGVGESGDKLLTAEKVVSEITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHIDFPNQKYDPSVGIYGMDICVTFEKPGYSVKRRKAKRANIPAKHLVSKEEAINYIETIY 174
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_CALMQ (50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl5p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22 Identity = 57/159 (35.85%), Postives = 93/159 (58.49%), Query Frame = 2 Query: 83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 556 +PMR I + + +N+ +G+SG+RL +AAKV+ +L+G+TP + A +++ FGIRR E I VT+R ++A+ L L ++ L +F + G FGI+EHI + G +YDP+ GI+G D V L HRV++E+ +++FQ Sbjct: 30 HPMRRIFIWSVAVNMGIGQSGERLEKAAKVMSELTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLRRNEAVWFLLRALAAVDFTLREESF-NAGNVSFGIREHILVPGSRYDPALGIFGFDVAVTLARPGFRVQYRRRARADVGKDHRVSREETIRFFQ 187
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22 Identity = 63/167 (37.72%), Postives = 91/167 (54.49%), Query Frame = 2 Query: 77 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGV 574 ++ MR+I ++K+VLN+ VG+SG+ + A + L ++SG+ P A T R FG+R+ E I VT+RG+ A L + K ++ R+F D G F FGI EHID+ GIKYDP GI G+D + L HR+T +A K F V+ GV Sbjct: 1 MAGDMRKITLEKVVLNMGVGQSGNAVEVAKRALGEISGKKPCGRDAHETQRDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLDVCMTLSRPGYGIRKRSKHKARVGRSHRITATEA-KDFVVREFGV 166
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_NATPD (50S ribosomal protein L5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl5p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20 Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = 2 Query: 89 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568 MRE V+K+V+++ VG G+ L +A ++LE++ Q PV + A+ T++ F +R + I T+RG+ A + LE+ L + + + R+ F +TG F FG++EH + +YDP GIYG+D V L HR+T EDA+ + + ++ Sbjct: 13 MREPTVEKVVVHMGVGRGGEPLAQAEEILEEIVEQQPVRTTAQKTIQDFEVREGDPIGTKATLRGEDAEEFLETALPLADID--RKQFDETGNFSFGVEEHTEFPSQEYDPQIGIYGLDVTVNLVRPGYRVHKRDKVSRSIPSNHRLTAEDAVTFLESNFD 171
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALMA (50S ribosomal protein L5P OS=Haloarcula marismortui GN=rpl5p PE=1 SV=4) HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20 Identity = 58/174 (33.33%), Postives = 94/174 (54.02%), Query Frame = 2 Query: 59 MASENKLS---NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568 M+SE++ + MRE +++K+V+++ +G G L A +L +++GQ PV +KA+ TV F IR + I VT+R + A + L++ L + EL F DTG F FG++EH + +YDPS GIYG+D V L +HR+ DA+ + + Y+ Sbjct: 1 MSSESESGGDFHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLA--ELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 172
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20 Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 2 Query: 89 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568 MRE +++K+V+++ VG+ G L A +LE ++GQ V +KA+ FG+R+ + I VT+R D A+ LE L + + RR F +TG FGI+EH D +YDP+ GIYGMD V L HR+ EDA+ + ++ Sbjct: 12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20 Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 2 Query: 89 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568 MRE +++K+V+++ VG+ G L A +LE ++GQ V +KA+ FG+R+ + I VT+R D A+ LE L + + RR F +TG FGI+EH D +YDP+ GIYGMD V L HR+ EDA+ + ++ Sbjct: 12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170 The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835596 ID=CF835596; Name=CF835596; organism=Citrus sinensis; type=EST; length=685bpback to top |