CF835596

Overview
NameCF835596
Unique NameCF835596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:22..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.422e-23
Identity = 64/165 (38.79%), Postives = 96/165 (58.18%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGV 574
            +PM++I ++K+VLN+ VG+SGD +  A++ LEQ+SG+ P    A+ T R +G+R+ E I   VT+RGD A  LL+  L+ K   +  R F + G + FGI+EHID+ G+KY+PS GI G+   V L                    H +T ++A K + VK  GV
Sbjct:    7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGIRTRSKHKASVGKSHIITSQEA-KDYLVKEFGV 170          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454
            NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G     + A+ ++R F IR+   I   VT+R   AM+ L+    VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V
Sbjct:    2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIV 126          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.058e-23
Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 2
Query:  104 VQKLVLNISVGESGDRLTRAAKVLEQLS-GQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKW 550
            V K+V+++ VGE+G+RL  A  ++  L+ G  P+ S AR T+ +FGIR+ + I C  T+RG KAM  LE  LK    E  L  R F  TG FGFGI+EH D  G  YDP  GIYGMD   V+E                  +  V +E++MK+
Sbjct:    9 VAKVVVHMGVGEAGERLVNAENIMADLTKGAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKGTRTARRKIQQKKINSKLHVAREESMKF 161          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 60/164 (36.59%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   86 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565
            PM + +++K+ +N+ VGESGD+L  A KV+ +++GQ PV + A+ T  +F IR+   I   +T+RG KA + L+   +       +L   +F   G F FGI EHID    KYDPS GIYGMD  V  E                  +H V+KE+A+ + +  Y
Sbjct:   11 PMSKPRIEKVTVNMGVGESGDKLLTAEKVVSEITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHIDFPNQKYDPSVGIYGMDICVTFEKPGYSVKRRKAKRANIPAKHLVSKEEAINYIETIY 174          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_CALMQ (50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 57/159 (35.85%), Postives = 93/159 (58.49%), Query Frame = 2
Query:   83 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 556
            +PMR I +  + +N+ +G+SG+RL +AAKV+ +L+G+TP +  A  +++ FGIRR E I   VT+R ++A+  L   L   ++ L   +F + G   FGI+EHI + G +YDP+ GI+G D  V L                    HRV++E+ +++FQ
Sbjct:   30 HPMRRIFIWSVAVNMGIGQSGERLEKAAKVMSELTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLRRNEAVWFLLRALAAVDFTLREESF-NAGNVSFGIREHILVPGSRYDPALGIFGFDVAVTLARPGFRVQYRRRARADVGKDHRVSREETIRFFQ 187          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 63/167 (37.72%), Postives = 91/167 (54.49%), Query Frame = 2
Query:   77 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGV 574
            ++  MR+I ++K+VLN+ VG+SG+ +  A + L ++SG+ P    A  T R FG+R+ E I   VT+RG+ A  L     + K  ++  R+F D G F FGI EHID+ GIKYDP  GI G+D  + L                    HR+T  +A K F V+  GV
Sbjct:    1 MAGDMRKITLEKVVLNMGVGQSGNAVEVAKRALGEISGKKPCGRDAHETQRDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLDVCMTLSRPGYGIRKRSKHKARVGRSHRITATEA-KDFVVREFGV 166          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_NATPD (50S ribosomal protein L5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.922e-20
Identity = 53/161 (32.92%), Postives = 90/161 (55.90%), Query Frame = 2
Query:   89 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568
            MRE  V+K+V+++ VG  G+ L +A ++LE++  Q PV + A+ T++ F +R  + I    T+RG+ A + LE+ L + + +  R+ F +TG F FG++EH +    +YDP  GIYG+D  V L                    HR+T EDA+ + +  ++
Sbjct:   13 MREPTVEKVVVHMGVGRGGEPLAQAEEILEEIVEQQPVRTTAQKTIQDFEVREGDPIGTKATLRGEDAEEFLETALPLADID--RKQFDETGNFSFGVEEHTEFPSQEYDPQIGIYGLDVTVNLVRPGYRVHKRDKVSRSIPSNHRLTAEDAVTFLESNFD 171          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALMA (50S ribosomal protein L5P OS=Haloarcula marismortui GN=rpl5p PE=1 SV=4)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 58/174 (33.33%), Postives = 94/174 (54.02%), Query Frame = 2
Query:   59 MASENKLS---NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568
            M+SE++     + MRE +++K+V+++ +G  G  L  A  +L +++GQ PV +KA+ TV  F IR  + I   VT+R + A + L++ L +   EL    F DTG F FG++EH +    +YDPS GIYG+D  V L                   +HR+   DA+ + +  Y+
Sbjct:    1 MSSESESGGDFHEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLA--ELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADAVAFIESTYD 172          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   89 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   89 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL5_NITMS1.422e-2338.7950S ribosomal protein L5P OS=Nitrosopumilus mariti... [more]
RL5_THEAC5.404e-2344.0050S ribosomal protein L5P OS=Thermoplasma acidophi... [more]
RL5_METLZ7.058e-2341.1850S ribosomal protein L5P OS=Methanocorpusculum la... [more]
RL5_META31.572e-2236.5950S ribosomal protein L5P OS=Methanococcus aeolicu... [more]
RL5_CALMQ1.572e-2235.8550S ribosomal protein L5P OS=Caldivirga maquilinge... [more]
RL5_CENSY3.503e-2237.7250S ribosomal protein L5P OS=Cenarchaeum symbiosum... [more]
RL5_NATPD1.922e-2032.9250S ribosomal protein L5P OS=Natronomonas pharaoni... [more]
RL5_HALMA2.510e-2033.3350S ribosomal protein L5P OS=Haloarcula marismortu... [more]
RL5_HALSA5.593e-2034.7850S ribosomal protein L5P OS=Halobacterium salinar... [more]
RL5_HALS35.593e-2034.7850S ribosomal protein L5P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835596 ID=CF835596; Name=CF835596; organism=Citrus sinensis; type=EST; length=685bp
CCGTCTCCGTCCTCTTATATACTGAGCAGCGGCAGTAACTCATCATCAGC
AACCTTTAATGGCTTCAGAGAATAAACTTTCGAACCCCATGAGGGAAATT
AAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGATCG
TCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACCTG
TTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTAAT
GAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCT
TTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGAAATT
TCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTT
GGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATTTCTTTGT
GGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGCCGCCGTAGGTGCAAGT
CTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAATGAAATGG
TTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGAATATTGG
TGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGTTGATGTT
TGTAGACACTGGCTATTACTTGGCGTTTTGCAAAC
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