CF835596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20 Identity = 50/171 (29.24%), Postives = 94/171 (54.97%), Query Frame = 2 Query: 59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568 M+ S+ MRE ++K+V+++ VG+ G+ L A +++E+++ Q V + ++ T+ FGIR+ + I VT+RG+ A L++ L++ ++ + F DTG FG+++H D +YDP+ GIYG+D + +HR+T EDA + + ++ Sbjct: 1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTDFPSQEYDPNIGIYGLDVTTTIVRPGYRVSKRDKATASIPSKHRMTAEDATAFLETNFD 169
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19 Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 2 Query: 59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565 M+ + + MRE +++K+V++++VGE G L A ++L++++GQT V + A FG R + I VT+RG A LE L + + R F +TG F FG++EH +YDP GIYG+D V L +HR+T DA+++ + ++ Sbjct: 1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12 Identity = 44/144 (30.56%), Postives = 78/144 (54.17%), Query Frame = 2 Query: 50 QPLMASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 +P M + NPM + K+V+N+ VGE+ ++T AA L Q++GQ PV ++AR + +F +R N+ + VT+R + + ++ + +V+++ L ++F G + G++EHI I YD I+GMD V Sbjct: 19 RPKMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12 Identity = 45/151 (29.80%), Postives = 83/151 (54.97%), Query Frame = 2 Query: 38 THHQ---QPLMASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 TH+ +P + E NPM+ ++K+V+N+ VGE+ ++T AA L +++GQ PV ++AR + +F +R N+ + VT+R + + ++ + +V+++ L ++F G + G++EHI I YD I+GMD V Sbjct: 12 THYDSVVRPKLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_AQUAE (50S ribosomal protein L5 OS=Aquifex aeolicus GN=rplE PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12 Identity = 46/143 (32.17%), Postives = 78/143 (54.55%), Query Frame = 2 Query: 53 PLMASENKLSNPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 P++ + +PM+ ++QK+V+N+ VGE+ +L RA + L ++GQ PV ++AR + F +R+ I C VT+R ++ L+ + +VK+++ L R+F G + FGI E I I YD I GMD + Sbjct: 22 PILQKKFNYKSPMQIPRLQKIVVNMGVGEAVQDIRQLERAVEDLRAITGQQPVITRARKSEAGFKLRKGMPIGCKVTLRKERMWDFLDKLISVALPRVKDFKGLSPRSFDGRGNYAFGIAEQIVFPEIDYDKVDRIRGMDIII 164
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11 Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 2 Query: 80 SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 SN M+ K++K+V+N+ VGE+ ++ A L +++GQ PV +KAR ++ F +R + C VT+R D+ + L+ + +VK++ L+ +F G + G++EHI I YD I+GMD V Sbjct: 29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_MYCGA (50S ribosomal protein L5 OS=Mycoplasma gallisepticum GN=rplE PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11 Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 2 Query: 53 PLMASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLE-------QLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVL 457 PL+ E S+ M+ K++K+V+N+ VG++ T+ AK+LE +SGQ PV +KA + SF IR+ + I C VT+RG+K LE + +V+++ L R F G + GI+E I I YD I G D +V+ Sbjct: 13 PLLQKEFGFSSVMQVPKIEKIVINMGVGDA----TKDAKLLELAQAELQAISGQKPVITKAHSSNASFKIRQGQAIGCKVTLRGEKMWNFLEKLINIALPRVRDFRGLSNRAFDARGNYTLGIKEQIIFPEIIYDNVKKIRGFDVTLVI 157
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_MAGSA (50S ribosomal protein L5 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplE PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11 Identity = 43/145 (29.66%), Postives = 78/145 (53.79%), Query Frame = 2 Query: 50 QPLMASENKLSNPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454 +P + E +NPM+ K+QK+V+N+ VGE+ ++ A L +SGQ PV +KA+ ++ F +R + + C VT+R ++ + L+ + +V+++ + ++F G + G++E I I YD I GMD V Sbjct: 13 KPALQKEFNYANPMQVPKLQKIVINMGVGEAAQDSKKIESALAELTLISGQKPVSTKAKMSIAQFKLREGQVVGCKVTLRAERMYEFLDRLINIALPRVRDFRGVPGKSFDGRGNYSLGLKEQIVFPEIDYDKVETIRGMDIIFV 157
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HAHCH (50S ribosomal protein L5 OS=Hahella chejuensis (strain KCTC 2396) GN=rplE PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11 Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 2 Query: 53 PLMASENKLSNPMREIKVQKLVLNISVGES-GDR--LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 P + E S+ M+ +++K+ LN+ VGE+ GD+ + AA LE ++GQ V +KAR +V F IR+ I C VT+RGD+ + E + +V+++ L +++F G + G++E I I YD + GMD + Sbjct: 14 PALMKEMSYSSVMQVPRIEKITLNMGVGEALGDKKQIEAAAADLEAITGQKVVVTKARKSVAGFKIRQGFPIGCKVTLRGDRMWEFFERLVDVAIPRVRDFRGLNQKSFDGRGNYSMGVKEQIIFPEIDYDKIDKVRGMDITI 156
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_SYNFM (50S ribosomal protein L5 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplE PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11 Identity = 43/144 (29.86%), Postives = 79/144 (54.86%), Query Frame = 2 Query: 53 PLMASENKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454 P ++ + K +PM+ ++ K++LN+ +G++ L AA+ L +SGQ PV ++AR ++ +F +R+ I C VT+RGD+ + + + +V+++ + R G + GI+EHI I YD I GM+ +V Sbjct: 14 PKLSEQFKYKSPMQIPRLSKIILNMGLGDAIQNIKILDSAAEELGMISGQKPVITRARQSIAAFKLRKGMPIGCMVTLRGDRMYEFFDKLVNVALPRVRDFRGVSSRALDGRGNYTLGIKEHIIFPEIDYDKIDKIKGMNITIV 157 The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835596 ID=CF835596; Name=CF835596; organism=Citrus sinensis; type=EST; length=685bpback to top |