CF835596

Overview
NameCF835596
Unique NameCF835596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:22..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.593e-20
Identity = 50/171 (29.24%), Postives = 94/171 (54.97%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 568
            M+     S+ MRE  ++K+V+++ VG+ G+ L  A +++E+++ Q  V + ++ T+  FGIR+ + I   VT+RG+ A   L++ L++   ++ +  F DTG   FG+++H D    +YDP+ GIYG+D    +                   +HR+T EDA  + +  ++
Sbjct:    1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTDFPSQEYDPNIGIYGLDVTTTIVRPGYRVSKRDKATASIPSKHRMTAEDATAFLETNFD 169          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 54/170 (31.76%), Postives = 89/170 (52.35%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 565
            M+  +   + MRE +++K+V++++VGE G  L  A ++L++++GQT V + A      FG R  + I   VT+RG  A   LE  L +    +  R F +TG F FG++EH      +YDP  GIYG+D  V L                   +HR+T  DA+++ + ++
Sbjct:    1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 44/144 (30.56%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   50 QPLMASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            +P M  +    NPM    + K+V+N+ VGE+     ++T AA  L Q++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   19 RPKMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 45/151 (29.80%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   38 THHQ---QPLMASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            TH+    +P +  E    NPM+   ++K+V+N+ VGE+     ++T AA  L +++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   12 THYDSVVRPKLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_AQUAE (50S ribosomal protein L5 OS=Aquifex aeolicus GN=rplE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 46/143 (32.17%), Postives = 78/143 (54.55%), Query Frame = 2
Query:   53 PLMASENKLSNPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            P++  +    +PM+  ++QK+V+N+ VGE+     +L RA + L  ++GQ PV ++AR +   F +R+   I C VT+R ++    L+  +     +VK+++ L  R+F   G + FGI E I    I YD    I GMD  +
Sbjct:   22 PILQKKFNYKSPMQIPRLQKIVVNMGVGEAVQDIRQLERAVEDLRAITGQQPVITRARKSEAGFKLRKGMPIGCKVTLRKERMWDFLDKLISVALPRVKDFKGLSPRSFDGRGNYAFGIAEQIVFPEIDYDKVDRIRGMDIII 164          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 2
Query:   80 SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            SN M+  K++K+V+N+ VGE+     ++  A   L +++GQ PV +KAR ++  F +R    + C VT+R D+  + L+  +     +VK++  L+  +F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_MYCGA (50S ribosomal protein L5 OS=Mycoplasma gallisepticum GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 52/149 (34.90%), Postives = 80/149 (53.69%), Query Frame = 2
Query:   53 PLMASENKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLE-------QLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVL 457
            PL+  E   S+ M+  K++K+V+N+ VG++    T+ AK+LE        +SGQ PV +KA  +  SF IR+ + I C VT+RG+K    LE  +     +V+++  L  R F   G +  GI+E I    I YD    I G D  +V+
Sbjct:   13 PLLQKEFGFSSVMQVPKIEKIVINMGVGDA----TKDAKLLELAQAELQAISGQKPVITKAHSSNASFKIRQGQAIGCKVTLRGEKMWNFLEKLINIALPRVRDFRGLSNRAFDARGNYTLGIKEQIIFPEIIYDNVKKIRGFDVTLVI 157          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_MAGSA (50S ribosomal protein L5 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 43/145 (29.66%), Postives = 78/145 (53.79%), Query Frame = 2
Query:   50 QPLMASENKLSNPMREIKVQKLVLNISVGESGD---RLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454
            +P +  E   +NPM+  K+QK+V+N+ VGE+     ++  A   L  +SGQ PV +KA+ ++  F +R  + + C VT+R ++  + L+  +     +V+++  +  ++F   G +  G++E I    I YD    I GMD   V
Sbjct:   13 KPALQKEFNYANPMQVPKLQKIVINMGVGEAAQDSKKIESALAELTLISGQKPVSTKAKMSIAQFKLREGQVVGCKVTLRAERMYEFLDRLINIALPRVRDFRGVPGKSFDGRGNYSLGLKEQIVFPEIDYDKVETIRGMDIIFV 157          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_HAHCH (50S ribosomal protein L5 OS=Hahella chejuensis (strain KCTC 2396) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 2
Query:   53 PLMASENKLSNPMREIKVQKLVLNISVGES-GDR--LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            P +  E   S+ M+  +++K+ LN+ VGE+ GD+  +  AA  LE ++GQ  V +KAR +V  F IR+   I C VT+RGD+  +  E  +     +V+++  L +++F   G +  G++E I    I YD    + GMD  +
Sbjct:   14 PALMKEMSYSSVMQVPRIEKITLNMGVGEALGDKKQIEAAAADLEAITGQKVVVTKARKSVAGFKIRQGFPIGCKVTLRGDRMWEFFERLVDVAIPRVRDFRGLNQKSFDGRGNYSMGVKEQIIFPEIDYDKIDKVRGMDITI 156          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_SYNFM (50S ribosomal protein L5 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 43/144 (29.86%), Postives = 79/144 (54.86%), Query Frame = 2
Query:   53 PLMASENKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454
            P ++ + K  +PM+  ++ K++LN+ +G++      L  AA+ L  +SGQ PV ++AR ++ +F +R+   I C VT+RGD+  +  +  +     +V+++  +  R     G +  GI+EHI    I YD    I GM+  +V
Sbjct:   14 PKLSEQFKYKSPMQIPRLSKIILNMGLGDAIQNIKILDSAAEELGMISGQKPVITRARQSIAAFKLRKGMPIGCMVTLRGDRMYEFFDKLVNVALPRVRDFRGVSSRALDGRGNYTLGIKEHIIFPEIDYDKIDKIKGMNITIV 157          
The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL5_HALLT5.593e-2029.2450S ribosomal protein L5P OS=Halorubrum lacusprofu... [more]
RL5_HALWD1.627e-1931.7650S ribosomal protein L5P OS=Haloquadratum walsbyi... [more]
RL5_XANP25.606e-1230.5650S ribosomal protein L5 OS=Xanthobacter autotroph... [more]
RL5_AZOC57.321e-1229.8050S ribosomal protein L5 OS=Azorhizobium caulinoda... [more]
RL5_AQUAE9.562e-1232.1750S ribosomal protein L5 OS=Aquifex aeolicus GN=rp... [more]
RL5_PHEZH1.249e-1132.8450S ribosomal protein L5 OS=Phenylobacterium zucin... [more]
RL5_MYCGA1.631e-1134.9050S ribosomal protein L5 OS=Mycoplasma galliseptic... [more]
RL5_MAGSA1.631e-1129.6650S ribosomal protein L5 OS=Magnetospirillum magne... [more]
RL5_HAHCH2.130e-1132.8750S ribosomal protein L5 OS=Hahella chejuensis (st... [more]
RL5_SYNFM3.633e-1129.8650S ribosomal protein L5 OS=Syntrophobacter fumaro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835596 ID=CF835596; Name=CF835596; organism=Citrus sinensis; type=EST; length=685bp
CCGTCTCCGTCCTCTTATATACTGAGCAGCGGCAGTAACTCATCATCAGC
AACCTTTAATGGCTTCAGAGAATAAACTTTCGAACCCCATGAGGGAAATT
AAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGATCG
TCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACCTG
TTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTAAT
GAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCT
TTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGAAATT
TCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTT
GGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATTTCTTTGT
GGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGCCGCCGTAGGTGCAAGT
CTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAATGAAATGG
TTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGAATATTGG
TGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGTTGATGTT
TGTAGACACTGGCTATTACTTGGCGTTTTGCAAAC
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