CF835596
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_CLONN (50S ribosomal protein L5 OS=Clostridium novyi (strain NT) GN=rplE PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11 Identity = 45/144 (31.25%), Postives = 78/144 (54.17%), Query Frame = 2 Query: 53 PLMASENKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454 P + + N M+ K++K+V+N+ VGE+ D L A L+Q++GQ PV ++A+ +V +F IR+N I C VT+R D + + + +V+++ + ++F G + GI+E I I+YD + GMD V Sbjct: 14 PALMEKFGYKNIMQVPKLEKIVVNMGVGEAKDNSKVLESAIADLQQITGQKPVITRAKKSVANFKIRQNMPIGCKVTLRKDMMFEFADKLMNIALPRVRDFRGVSAKSFDGRGNYALGIKEQIIFPEIEYDKIDKVRGMDIIFV 157
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RICPR (50S ribosomal protein L5 OS=Rickettsia prowazekii GN=rplE PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11 Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 2 Query: 101 KVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454 K++K+V+N+ VGE+ + A L +SGQ PV + AR ++ +F +R N KI C VT+R D+ LE + +VKE+ ++F G F FG++E I I YD I GMD +V Sbjct: 30 KIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPVVTLARKSIATFKLRENMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDTIRGMDITIV 157
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_AGRT5 (50S ribosomal protein L5 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplE PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11 Identity = 46/141 (32.62%), Postives = 76/141 (53.90%), Query Frame = 2 Query: 59 MASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 M + +N M K+ K+V+N+ VGE+ + T AA L ++GQ PV +KAR ++ F +R + I VT+RG++ + L+ + +V+++ L ++F G F GI+EHI I YD ++GMD V Sbjct: 21 MQEKFSYANVMMIPKLDKIVINMGVGEATADSKKPTIAAGDLAAIAGQKPVITKARNSIAGFKVREHMPIGAKVTLRGERMYEFLDRLINIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 161
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RUTMC (50S ribosomal protein L5 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rplE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11 Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = 2 Query: 53 PLMASENKLSNPMREIKVQKLVLNISVGES-GDR--LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLRRN-FSDTGCFGFGIQEHIDLG-IKYDPSTGIYGMDFFV 451 P + E +SNPM+ K++K+ +N+ +G + GD+ L A K + +SGQ P+ AR +V SF +R I C VT+R ++ + L+ + +++++ + F G + GI E I I ++ T I GMD + Sbjct: 14 PALQKELDMSNPMQVPKIEKITINMGLGSALGDKKVLQSALKEMSLISGQKPLICNARKSVASFKLREGNPIGCKVTLRKERMYEFLDRLINIAIPRIRDFRGFKATAFDGRGNYNMGITEQITFAEIDFEKVTRILGMDIAI 156
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RHIEC (50S ribosomal protein L5 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11 Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 59 MASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 M + +N M K+ K+V+N+ VGE+ + T AA L ++GQ PV ++AR ++ F +R N I VT+RG + + L+ + +V+++ L ++F G F GI+EHI I YD ++GMD V Sbjct: 22 MQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RHIE6 (50S ribosomal protein L5 OS=Rhizobium etli (strain CIAT 652) GN=rplE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11 Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = 2 Query: 59 MASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 M + +N M K+ K+V+N+ VGE+ + T AA L ++GQ PV ++AR ++ F +R N I VT+RG + + L+ + +V+++ L ++F G F GI+EHI I YD ++GMD V Sbjct: 22 MQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_NATTJ (50S ribosomal protein L5 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplE PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11 Identity = 39/144 (27.08%), Postives = 80/144 (55.56%), Query Frame = 2 Query: 50 QPLMASENKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451 +P + E N M K++K+V+N+ +G++ D L A + LEQ++GQ PV +KA+ ++ +F +R+ + C VT+RG++ L+ + +V++++ + + F G + G++E + ++YD + GMD + Sbjct: 13 KPKLKDEMGYKNIMEVPKLEKVVVNMGIGDAKDNPKILDNAVENLEQVTGQKPVVTKAKRSIANFKVRQGMPVGCKVTLRGERMYHFLDKLINVALPRVRDFKGVSPKAFDGRGNYSLGLKEQMVFPELEYDDIERVQGMDIII 156 The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835596 ID=CF835596; Name=CF835596; organism=Citrus sinensis; type=EST; length=685bpback to top |