CF835596

Overview
NameCF835596
Unique NameCF835596
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:22..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_CLONN (50S ribosomal protein L5 OS=Clostridium novyi (strain NT) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 45/144 (31.25%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   53 PLMASENKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454
            P +  +    N M+  K++K+V+N+ VGE+ D    L  A   L+Q++GQ PV ++A+ +V +F IR+N  I C VT+R D   +  +  +     +V+++  +  ++F   G +  GI+E I    I+YD    + GMD   V
Sbjct:   14 PALMEKFGYKNIMQVPKLEKIVVNMGVGEAKDNSKVLESAIADLQQITGQKPVITRAKKSVANFKIRQNMPIGCKVTLRKDMMFEFADKLMNIALPRVRDFRGVSAKSFDGRGNYALGIKEQIIFPEIEYDKIDKVRGMDIIFV 157          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RICPR (50S ribosomal protein L5 OS=Rickettsia prowazekii GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  101 KVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 454
            K++K+V+N+ VGE+      +  A   L  +SGQ PV + AR ++ +F +R N KI C VT+R D+    LE  +     +VKE+     ++F   G F FG++E I    I YD    I GMD  +V
Sbjct:   30 KIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPVVTLARKSIATFKLRENMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDTIRGMDITIV 157          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_AGRT5 (50S ribosomal protein L5 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 46/141 (32.62%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            M  +   +N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV +KAR ++  F +R +  I   VT+RG++  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   21 MQEKFSYANVMMIPKLDKIVINMGVGEATADSKKPTIAAGDLAAIAGQKPVITKARNSIAGFKVREHMPIGAKVTLRGERMYEFLDRLINIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 161          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RUTMC (50S ribosomal protein L5 OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = 2
Query:   53 PLMASENKLSNPMREIKVQKLVLNISVGES-GDR--LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLRRN-FSDTGCFGFGIQEHIDLG-IKYDPSTGIYGMDFFV 451
            P +  E  +SNPM+  K++K+ +N+ +G + GD+  L  A K +  +SGQ P+   AR +V SF +R    I C VT+R ++  + L+  +     +++++   +   F   G +  GI E I    I ++  T I GMD  +
Sbjct:   14 PALQKELDMSNPMQVPKIEKITINMGLGSALGDKKVLQSALKEMSLISGQKPLICNARKSVASFKLREGNPIGCKVTLRKERMYEFLDRLINIAIPRIRDFRGFKATAFDGRGNYNMGITEQITFAEIDFEKVTRILGMDIAI 156          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RHIEC (50S ribosomal protein L5 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            M  +   +N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   22 MQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_RHIE6 (50S ribosomal protein L5 OS=Rhizobium etli (strain CIAT 652) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = 2
Query:   59 MASENKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            M  +   +N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   22 MQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CF835596 vs. ExPASy Swiss-Prot
Match: RL5_NATTJ (50S ribosomal protein L5 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 39/144 (27.08%), Postives = 80/144 (55.56%), Query Frame = 2
Query:   50 QPLMASENKLSNPMREIKVQKLVLNISVGESGDR---LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 451
            +P +  E    N M   K++K+V+N+ +G++ D    L  A + LEQ++GQ PV +KA+ ++ +F +R+   + C VT+RG++    L+  +     +V++++ +  + F   G +  G++E +    ++YD    + GMD  +
Sbjct:   13 KPKLKDEMGYKNIMEVPKLEKVVVNMGIGDAKDNPKILDNAVENLEQVTGQKPVVTKAKRSIANFKVRQGMPVGCKVTLRGERMYHFLDKLINVALPRVRDFKGVSPKAFDGRGNYSLGLKEQMVFPELEYDDIERVQGMDIII 156          
The following BLAST results are available for this feature:
BLAST of CF835596 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL5_CLONN4.745e-1131.2550S ribosomal protein L5 OS=Clostridium novyi (str... [more]
RL5_RICPR6.198e-1135.9450S ribosomal protein L5 OS=Rickettsia prowazekii ... [more]
RL5_AGRT56.198e-1132.6250S ribosomal protein L5 OS=Agrobacterium tumefaci... [more]
RL5_RUTMC8.094e-1130.0750S ribosomal protein L5 OS=Ruthia magnifica subsp... [more]
RL5_RHIEC8.094e-1132.6250S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_RHIE68.094e-1132.6250S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_NATTJ8.094e-1127.0850S ribosomal protein L5 OS=Natranaerobius thermop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835596 ID=CF835596; Name=CF835596; organism=Citrus sinensis; type=EST; length=685bp
CCGTCTCCGTCCTCTTATATACTGAGCAGCGGCAGTAACTCATCATCAGC
AACCTTTAATGGCTTCAGAGAATAAACTTTCGAACCCCATGAGGGAAATT
AAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGATCG
TCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACCTG
TTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTAAT
GAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGCT
TTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGAAATT
TCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATCTT
GGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATTTCTTTGT
GGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGCCGCCGTAGGTGCAAGT
CTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAATGAAATGG
TTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGAATATTGG
TGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGTTGATGTT
TGTAGACACTGGCTATTACTTGGCGTTTTGCAAAC
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