CF835597

Overview
NameCF835597
Unique NameCF835597
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835597 vs. ExPASy Swiss-Prot
Match: S15A4_MOUSE (Solute carrier family 15 member 4 OS=Mus musculus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 52/199 (26.13%), Postives = 93/199 (46.73%), Query Frame = -2
Query:  183 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR-----------RASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMRSIANSLLFCSFGFASYLSSLLITIV--HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 740
            +P   + +   + I L +P  D ++ P LR+   H    + L+RI +GM F + S   AG++E  R                ++  + + ++W  PQ +L+G  E F  I  +EF     P  M+S    L F   G  S++ S L+ +V    +     H D+   +I++  L Y++FL+A + G  ++ FL  + +Y
Sbjct:  365 LPAAWLTMFDAVLILLLIPLKDKLVDPVLRR---HGLLPSSLKRIAVGMFFVMCSAFAAGILESKRLDLVKEKTINQTIGGVVYHAADLPIWWQIPQYVLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGIGSFVGSGLLALVSLKAIGWMSSHTDF--GNINSCHLHYYFFLLAAIQGATLLLFLIVSVKY 558          
BLAST of CF835597 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.921e-12
Identity = 54/199 (27.14%), Postives = 94/199 (47.24%), Query Frame = -2
Query:  183 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ-----------VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMRSIANSLLFCSFGFASYLSSLLITIV--HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 740
            +P   + +   + I L +P  D ++ P LR+   H    + L+RI +GM F + S   AG++E  R        ++Q           +S++W  PQ +L+G  E F  I  +EF     P  M+S    L F   G  S++ S L+ +V    +     H D+   +I+   L+Y++FL+A + G  ++ FL  + +Y
Sbjct:  364 LPAAWLTMFDAVLILLLIPLKDKLVDPILRR---HGLLPSSLKRIAVGMFFVMCSAFAAGILESKRLNLVKEKTINQTIGNVVYHAADLSLWWQVPQYLLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALVSIKAIGWMSSHTDF--GNINGCYLNYYFFLLAAIQGATLLLFLIISVKY 557          
BLAST of CF835597 vs. ExPASy Swiss-Prot
Match: S15A4_RAT (Solute carrier family 15 member 4 OS=Rattus norvegicus GN=Slc15a4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.509e-12
Identity = 52/199 (26.13%), Postives = 92/199 (46.23%), Query Frame = -2
Query:  183 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGR-----------RASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMRSIANSLLFCSFGFASYLSSLLITIV--HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 740
            +P   + +   + I L +P  D ++ P LR+   H    + L+RI +GM F   S   AG++E  R                ++  + + ++W  PQ +L+G  E F  I  +EF     P  M+S    L F   G  S++ S L+ +V    +     H D+   +I++  L Y++FL+A + G  ++ FL  + +Y
Sbjct:  363 LPAAWLTMFDAVLILLLIPLKDKLVDPVLRR---HGLLPSSLKRIAVGMFFVTCSAFAAGILESKRLDLVKEKTINQTIGGVVYHAADLPIWWQIPQYVLIGISEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGIGSFVGSGLLALVSLKAIGWMSSHTDF--GNINSCHLHYYFFLLAAIQGATLLLFLIVSVKY 556          
BLAST of CF835597 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.276e-12
Identity = 54/204 (26.47%), Postives = 95/204 (46.57%), Query Frame = -2
Query:  183 IPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGGI--TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ-----------VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMRSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR-----LDYFYFLIAGLGGLNIVYFLYCARRY 740
            +P   + +   + I + +P  D ++ P L+K      G+  + L+RI +GM F + S++ AG++E  R        + Q           ++V+W  PQ IL+G  E F  I  +EF     P  M+S+   L F   G  S++ S L+ +V           W++N  D G      L+Y++FL+A +    ++ FL  + +Y
Sbjct:  365 LPAAWLTMFDAVLILILIPLKDKLVDPFLKK-----RGLLPSPLKRIAVGMFFVMCSVLAAGILESERLEIVKRDKIQQQIGNVTYYAANLTVWWQLPQYILIGISEIFASIAGLEFAYSAAPKSMQSVIMGLFFFFSGIGSFVGSGLLALV-----SIPQIGWMSNHSDLGNINGCTLNYYFFLLAAVQAATLLLFLIISVKY 558          
BLAST of CF835597 vs. ExPASy Swiss-Prot
Match: S15A4_BOVIN (Solute carrier family 15 member 4 OS=Bos taurus GN=SLC15A4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.124e-11
Identity = 53/192 (27.60%), Postives = 88/192 (45.83%), Query Frame = -2
Query:  183 WLPFYDTVLVPAL--------RKITKHEGGI-TLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQ-----------VSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMRSIANSLLFCSFGFASYLSSLLITIV--HGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRY 692
            WL  +D VL+  L          I K  G + + L+RI +GM F + S   AG++E  R        ++Q           + ++W  PQ +L+G  E F  I  +EF     P  M+S    L F   G  S++ S L+ +V    +     H D+   +I+   L+Y++FL+A + G  ++ FL  + +Y
Sbjct:  361 WLTMFDAVLILLLIPLKDKLVDPILKRNGLLPSSLKRIAVGMFFVMCSAFAAGILESKRLDLVKEKTINQTIGNVVYYAADLPIWWQVPQYVLIGVSEIFASIAGLEFAYSAAPKSMQSAIMGLFFFFSGVGSFVGSGLLALVSLKAIGWMSSHTDF--GNINGCYLNYYFFLLAAIQGATLLLFLIVSVKY 550          
The following BLAST results are available for this feature:
BLAST of CF835597 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
S15A4_MOUSE1.471e-1226.13Solute carrier family 15 member 4 OS=Mus musculus ... [more]
S15A4_HUMAN1.921e-1227.14Solute carrier family 15 member 4 OS=Homo sapiens ... [more]
S15A4_RAT2.509e-1226.13Solute carrier family 15 member 4 OS=Rattus norveg... [more]
S15A4_XENLA3.276e-1226.47Solute carrier family 15 member 4 OS=Xenopus laevi... [more]
S15A4_BOVIN2.124e-1127.60Solute carrier family 15 member 4 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01I16_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835597 ID=CF835597; Name=CF835597; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTGAAAAAATACTGTTTCTTATACATCCATATTTT
ATTCAATACTATAGAACATTGATACTTTATTTATTTCTAGCTATCTACTA
TTCATTGTTTGGTTGGATCAACAAGCTCAAGATCAAGATAGGGTTTTTGA
TCTTCTAATGATTGGATACCACTCTTATACCGGTAACGACGTGCACAGTA
CAGAAAATAGACAATGTTAAGGCCTCCTAATCCTGCAATAAGGAAGTAGA
AATAATCTAATCTTCCAGCATCGATGTCATTAGTCAACCAGTCGGGGTGG
CCATGCCTTGCTGTGACTCCATGCACAATGGTGATAAGCAAACTGCTCAA
GTAACTTGCAAATCCAAAGGAGCAAAAGAGGAGAGAATTAGCAATACTTC
TCATGTGGTCAGGAAACTGCTTGTTAAAAAATTCGATCTGTCCAATTATG
TTGAATGCCTCACAAAACCCCATCAGGATAAGTTGAGGAGCTAGCCAGAA
GACTGATACTTGTGACATAGGGTGCAAATGGGCAGAAGCCCTTCTCCCTC
TTTCAACTAAACCAGCAACTATCATGGACAGTATTGAAAAAATCATCCCA
ATTCCAATTCTCTGAAGAAGTGTGATCCCTCCTTCATGTTTAGTGATTTT
GCGAAGAGCTGGGACAAGAACTGTGTCATAAAATGGGAGCCAGAGTCCTA
TTGTGATCATTGATATGACCCCCACTGTACCTGGAGGGATTTGGAACTTA
GGCCCAAGGTGTCTGTTCATTTTCATGGCCTGTGAAACTGTGAATGTTCC
T
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