CF835708

Overview
NameCF835708
Unique NameCF835708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length834
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF835708_ssr372 microsatellite CF835708_ssr372:372..383. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF835708 vs. ExPASy Swiss-Prot
Match: FLRT_CITMA (Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltransferase OS=Citrus maxima GN=C12RT1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 42/133 (31.58%), Postives = 68/133 (51.13%), Query Frame = -2 
Query:  450 ELGLGLEASKKPFIWVTRVGSKXXXXXXXXXXXXXXERIK--GTGLLIRGWAPQVMILSHPAVGGFLTHCGWNSSLEGISAGVQMLTWPLFADQFCNEKLIVKVLRIGVGVGVEVP-----MKFGEEEKIGVL 827
            ++ +GL  ++  FIW  R+                 E I+    G++++GW PQ  IL H ++GGFL+HCGW S +EG+  GV ++  P+  +Q  N K++V       G+G+ VP      + G EE   V+
Sbjct:  279 DIAIGLLLTEVNFIWAFRLHPDEKMTIEEALPQGFAEEIERNNKGMIVQGWVPQAKILRHGSIGGFLSHCGWGSVVEGMVFGVPIIGVPMAYEQPSNAKVVV-----DNGMGMVVPRDKINQRLGGEEVARVI 406
The following BLAST results are available for this feature:
BLAST of CF835708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
FLRT_CITMA1.744e-1131.58Flavanone 7-O-glucoside 2''-O-beta-L-rhamnosyltran... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835708 ID=CF835708; Name=CF835708; organism=Citrus sinensis; type=EST; length=834bp
TTTTTTTTTTTTTTTGTGAACCCATTTTATTAATTGGAGAAACCAAATTG
CGTATGTACGCTCTTACATCAGCACTAGAGAAGAGCTAGAATTTCAACGG
CTCGGTAGAATGCCATCAGTCATCCTACGCGAAAAATGGGGTTCTCAAAT
CTCAAATCTCAAATCTCAACCCCATTAGTCTTTTCTGACTTCAAGAAAAT
TGCCATGGATACAGAAGCAAGCCAGCTTCACTTTGTTCTGTTTCCTTTCA
TGTCTTATATCACTTCTGAGGATGGCTGTTGCATGATATCTTGGATAAAC
AATTTGATATGGTTATAGGAAGATCCCCCTTCTTCTAAAGCTCTCTGTGC
CAACTCTCCAAACTCTTTGGCTCTTCTTCTTCTTGCATCTCTTTCTTCTC
CATCATCCATTAGTATGTTTATAGCCGTTTCGACATCTTCCTTCTTCACC
AACACTCCAATCTTCTCTTCTTCCCCAAACTTCATTGGAACTTCCACTCC
AACACCCACACCAATCCTTAAAACTTTCACAATCAACTTCTCGTTACAAA
ATTGGTCTGCAAAAAGTGGCCAGGTAAGCATTTGAACCCCGGCTGATATC
CCTTCCAGAGATGAATTCCAGCCACAATGTGTTAAGAATCCTCCTACTGC
AGGGTGTGACAATATCATTACTTGTGGAGCCCAACCTCGGATCAAAAGGC
CTGTCCCTTTAATCCTTTCTTCAAAATTTTCTTCTACAAGCCATTTCTCT
AGTTCTTCTAATTTACTTCCTACCCTTGTAACCCAAATAAATGGTTTCTT
AGATGCTTCCAGGCCTAAACCAAGCTCAATCAGT
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