CF835709

Overview
NameCF835709
Unique NameCF835709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1124 contig Csv1_Contig1124:1..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_BACSU (Cystathionine gamma-synthase OS=Bacillus subtilis GN=metB PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.967e-17
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = -1
Query:  154 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 597
            L P  ++L++RGMKTL LR++Q  + A  +A  LE   ++  V YPG                 GG++SF +  +      F+ ALK    A S GG ES +  PA  ++ D+ +  R+  G+ + L+RFS G+E  EDLK D+ QAL
Sbjct:  232 LPPFDSWLLMRGMKTLSLRMRQHQANAQELAAFLEEQEEISDVLYPGK----------------GGMLSFRLQKEEWVN-PFLKALKTICFAESLGGVESFITYPATQTHMDIPEEIRIANGVCNRLLRFSVGIEHAEDLKEDLKQAL 362          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_RHIL3 (Putative cystathionine beta-lyase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=metC PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.767e-15
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = -1
Query:  166 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV--DGDLTATIK---FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 591
            P+ AY I+RG++T+ LR+++   +AL +AK LE    V RV +P L S P HH+  +   G  G+ SF +  DG   +  K   F+DAL+I  +  S+GG ES+    A+ +Y  L+     K      ++R   G+ED  DLKAD+
Sbjct:  246 PDDAYQILRGLRTMGLRLERHYESALDIAKWLEGRDDVARVLHPALPSFPSHHLWKRDFKGASGIFSFVLAADGPEKSRAKAHAFLDALRIFGLGYSWGGFESL----ALHAY--LNDRTVAKAPTDGPVIRLQIGIEDVADLKADI 386          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: CBL_SCHPO (Cystathionine beta-lyase OS=Schizosaccharomyces pombe GN=str3 PE=2 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 45/149 (30.20%), Postives = 81/149 (54.36%), Query Frame = -1
Query:  154 SLNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 600
            ++ P   +L++RG+KT+ LRV++    A+ +AK L++  K  +V++PGL    +            G V     GD+  +   ++  K+  I+ SFG   S++  PA MS+  + +  R   G+ ++L+R   G+E+ +DLKAD+  AL
Sbjct:  236 AMAPFECFLLLRGIKTMGLRVERAQQNAIEIAKFLKS--KGLQVNFPGLDPDAKSTAIFYSFARGPGAVMSVFTGDVEVSKTIVNTTKLFEISVSFGAVNSLISMPAYMSHASIKKEVRDARGLSEDLIRICVGIENVDDLKADLENAL 382          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_HAEIN (Cystathionine beta-lyase OS=Haemophilus influenzae GN=metC PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.165e-14
Identity = 52/167 (31.14%), Postives = 94/167 (56.29%), Query Frame = -1
Query:  166 N*RTWRPSLSREACLYS--LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA--TIKFIDALKIPYIAPSFGGCESIV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 648
            N RTW   L   + L    ++ ++AY   RG++TL +R++Q   +++++AK L   P+VK V++P L S P H    +  +G  G+ SFE+   LT+    KF+D  ++  +A S+GG ES++  +QP  +++        +K  +  +L+R   G E+ ++L AD+
Sbjct:  227 NARTW-DQLREHSYLMGQMVDADSAYTTARGIRTLGVRLKQHQESSIKVAKWLSEQPEVKTVYHPALPSCPGHEFFLRDFSGSSGLFSFELTQRLTSEQVSKFMDHFQLFAMAYSWGGFESLILCNQPEEIAH----IRPNIKRNLTGSLIRVHIGFENVDELIADL 388          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METB_HERAU (Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.440e-14
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = -1
Query:  334 PNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 591
            P   +L++RG+KTL +R++     AL +A+ L  HP V++V YPGL SHP+H++A +QM GFGG++S  + G   A    +   K+
Sbjct:  234 PFDCWLVLRGVKTLSIRMRDDERNALAIAQFLTEHPGVEKVIYPGLPSHPQHNLAREQMRGFGGMISILLKGGAEAANAMVSKTKL 319          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_BORAV (Cystathionine beta-lyase OS=Bordetella avium GN=metC PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 48/155 (30.97%), Postives = 82/155 (52.90%), Query Frame = -1
Query:  154 YSLNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVD-----QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 603
            YS++ + A+L +RG++T+ +R+ Q    AL + + L+  P+V R+++P   + P H +  +  +G  G+++ ++     A   F++AL +  I  S+GG ES+V      + A   YW          G  D LVR   G+E   DL AD+ QAL
Sbjct:  247 YSVSADDAWLALRGVRTMPVRMAQHARHALEVCEFLQNRPEVVRLYHPAWPADPGHALWQRDCSGSNGMLAVQLGLSPQAARDFVNALTLFGIGFSWGGFESLVQLVTPGELARHQYWQ---------GGSDALVRLHIGLESPADLIADLAQAL 392          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: STR3_YEAST (Cystathionine beta-lyase OS=Saccharomyces cerevisiae GN=STR3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.650e-12
Identity = 47/158 (29.75%), Postives = 81/158 (51.27%), Query Frame = -1
Query:  154 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAH--------PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY--IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 597
            L+P  ++L++RG+KTL +R+ QQ   A+ +A  LE           K  +  + GL+S+P+  +      G G V+SFE  G    + + + + K+    +  SFG   S++  P  MS+  +    R +    ++LVR   G+E+  DLK D+L A+
Sbjct:  248 LSPMDSWLLVRGLKTLGVRLYQQQRNAMILAHWLENSCGFKPTRTNKATKTRFVGLRSNPDFKLHKSFNNGPGAVLSFET-GSFEHSKRLVSSKKLSIWAVTVSFGCVNSLLSMPCKMSHASIDPELRKERDFPEDLVRLCCGIENIVDLKKDLLAAM 404          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_ECOLI (Cystathionine beta-lyase metC OS=Escherichia coli (strain K12) GN=metC PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11
Identity = 43/148 (29.05%), Postives = 81/148 (54.73%), Query Frame = -1
Query:  166 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT--ATIKFIDALKIPYIAPSFGGCESIV--DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 597
            ++ + AY+  RG++TL +R++Q + ++L++A+ L  HP+V RV++P L     H    +  TG  G+ SF +   L       ++D   +  +A S+GG ES++  +QP  ++    +   + +      L+R   G+ED +DL AD+
Sbjct:  244 VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIA----AIRPQGEIDFSGTLIRLHIGLEDVDDLIADL 387          
BLAST of CF835709 vs. ExPASy Swiss-Prot
Match: METC_SALTY (Cystathionine beta-lyase OS=Salmonella typhimurium GN=metC PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 46/148 (31.08%), Postives = 79/148 (53.38%), Query Frame = -1
Query:  166 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT--IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGI--MDNLVRFSFGVEDFEDLKADV 597
            L+ + AY+  RG++TL +R++Q   ++L++A  L  HP+V RV++P L     H    +  TG  G+ SF ++  LT      ++D   +  +A S+GG ES++    I +  +   + R   G+     LVR   G+E  +DL AD+
Sbjct:  244 LDADTAYMTSRGLRTLGVRLRQHQESSLKIAAWLANHPQVARVNHPALPGSKGHAFWKRDFTGSSGLFSFVLNKKLTEAELSAYLDNFSLFSMAYSWGGYESLI----IANQPEQIAAIRPAGGVDFTGTLVRVHIGLESVDDLIADL 387          
The following BLAST results are available for this feature:
BLAST of CF835709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
METB_BACSU8.967e-1735.81Cystathionine gamma-synthase OS=Bacillus subtilis ... [more]
METC_RHIL33.767e-1536.73Putative cystathionine beta-lyase OS=Rhizobium leg... [more]
CBL_SCHPO1.432e-1430.20Cystathionine beta-lyase OS=Schizosaccharomyces po... [more]
METC_HAEIN4.165e-1431.14Cystathionine beta-lyase OS=Haemophilus influenzae... [more]
METB_HERAU5.440e-1440.70Probable cystathionine gamma-synthase (Fragment) O... [more]
METC_BORAV2.286e-1230.97Cystathionine beta-lyase OS=Bordetella avium GN=me... [more]
STR3_YEAST6.650e-1229.75Cystathionine beta-lyase OS=Saccharomyces cerevisi... [more]
METC_ECOLI2.527e-1129.05Cystathionine beta-lyase metC OS=Escherichia coli ... [more]
METC_SALTY9.603e-1131.08Cystathionine beta-lyase OS=Salmonella typhimurium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835709 ID=CF835709; Name=CF835709; organism=Citrus sinensis; type=EST; length=753bp
ACGATATGAAGTTTTAAGATTATTCAAGGATTATTGTCACTAAAACATAA
TAACAAAACGAACATATTCAAACATCAAAAGAGAATGCCGTTAGGAAAAG
TAAAATGAAAAATTTGCGAAGGTGAAACACAAAAAACACTTCTATATGGC
GTGCAGGGCCTGAAGTACATCAGCCTTCAAATCTTCAAAATCTTCCACTC
CAAAGCTAAAGCGAACCAAGTTATCCATAATCCCATACTTGAGCCTCTCC
GATTGGCTAAGGTCCCAATACGACATTATAGCTGGCTGATCAACAATGCT
CTCACAGCCACCGAAGGATGGAGCAATATATGGGATTTTCAAGGCATCAA
TAAATTTTATGGTGGCCGTTAGGTCTCCATCAACCTCAAAACTAACTACC
CCACCAAAACCAGTCATTTGCTGTGTGGCAATGTGATGCTCAGGATGACT
CTTCAAGCCTGGATAGTGAACGCGCTTCACCTTTGGATGTGCCTCTAAAA
TCTTGGCCATCCTCAACGCAGTTGAATTTTGTTGCTGTACACGAAGATGC
AATGTCTTCATGCCTCGAATGATCAAATACGCGGCATTCGGGTTGAGAGA
ATATAGACATGCTTCCCTCGATAGACTTGGCCTCCAAGTTCTTCAATTCT
CTTAGCATGCTTCAATTGCCTTTTGAAAATTTGTTCAAAGAGCAAACTCC
TAAGCCCTGCTGCATAATCTCTGACATGGGCCATCCTTTGGACGTCGATA
CTG
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