CF835710 | Citrus Genome Database

Overview


Name	CF835710
Unique Name	CF835710
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	751

Libraries


Library Name	Type
Washington Navel Orange Shoot Meristem cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: WAK4_ARATH (Wall-associated receptor kinase 4 OS=Arabidopsis thaliana GN=WAK4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.635e-20
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGAC--PEINCLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +V VLSQI H +VV LLG C   E+  LVYE++ +G+L D+++      +L W  R ++  E+A  LA+LH+S   PI+HRD
Sbjct:  454 EVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWEHRLRMAVEIAGTLAYLHSSASIPIIHRD 535

HSP 2 Score: 52.373 bits (124), Expect = 1.635e-20
Identity = 20/38 (52.63%), Postives = 32/38 (84.21%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            T++ GTL Y+DPEY+ TG +  KSD+Y+FGV++++LL+
Sbjct:  569 TMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLS 606

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: WAK5_ARATH (Wall-associated receptor kinase 5 OS=Arabidopsis thaliana GN=WAK5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.635e-20
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGAC--PEINCLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +V VLSQI H +VV LLG C   E+  LVYE++ +G+L D+++      +L W  R +I  EVA  LA+LH+    PI+HRD
Sbjct:  452 EVLVLSQINHRNVVKLLGCCLETEVPLLVYEFISSGTLFDHLHGSMFDSSLTWEHRLRIAIEVAGTLAYLHSYASIPIIHRD 533

HSP 2 Score: 52.7582 bits (125), Expect = 1.635e-20
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 3

Query:  351 EYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            E   T++ GTL Y+DPEY+ TG +  KSD+Y+FGV++++LL+
Sbjct:  563 EQLTTMVQGTLGYLDPEYYNTGLLNEKSDVYSFGVVLMELLS 604

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.760e-20
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            ++E+LSQ RH H+V L+G C E N   L+YEY+ENG+++ ++Y  +G P+L W  R +I    A GL +LH    KP++HRD
Sbjct:  529 EIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYG-SGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIHRD 609

HSP 2 Score: 41.2022 bits (95), Expect = 2.760e-20
Identity = 16/37 (43.24%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLL 473
            T + G+  Y+DPEY R   +  KSD+Y+FGV++ ++L
Sbjct:  644 TAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVL 680

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.584e-20
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +VE+L ++ H ++V L+G C E     L+YEY+ NG L +++  + G   L W  R +I+ E A GL +LHN    P+VHRD
Sbjct:  636 EVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSGKRGGSILNWETRLKIVVESAQGLEYLHNGCKPPMVHRD 717

HSP 2 Score: 52.7582 bits (125), Expect = 3.584e-20
Identity = 20/41 (48.78%), Postives = 34/41 (82.93%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCL 485
            T++AGT  Y+DPEY+RT  +  KSD+Y+FG+++L+++T+ L
Sbjct:  752 TVVAGTPGYLDPEYYRTNWLNEKSDVYSFGIVLLEIITNQL 792

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 4.663e-20
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +VE+L ++ H ++V L+G C E +   L+YEY+ NG L++++     +  L W  R +I+ E A GL +LHN    P+VHRD
Sbjct:  622 EVELLLRVHHKNLVGLVGYCDEGDNLALIYEYMANGDLKEHMSGTRNRFILNWGTRLKIVIESAQGLEYLHNGCKPPMVHRD 703

HSP 2 Score: 53.9138 bits (128), Expect = 4.663e-20
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS 479
            T++AGT  Y+DPEYHRT  +  KSD+Y+FG+++L+++T+
Sbjct:  738 TVVAGTPGYLDPEYHRTNWLTEKSDVYSFGILLLEIITN 776

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 6.064e-20
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD*QHHRVQRDHSC 373
            +VE+L ++ H H+V L+G C + +   L+YEY+ NG L + +  + G   L W  R QI  E A GL +LHN    P+VHRD +   +  +  C
Sbjct:  627 EVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMANGDLRENMSGKRGGNVLTWENRMQIAVEAAQGLEYLHNGCRPPMVHRDVKTTNILLNERC 720

HSP 2 Score: 51.9878 bits (123), Expect = 6.064e-20
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS 479
            T++AGT  Y+DPEY+RT  +  KSD+Y+FGV++L+++T+
Sbjct:  743 TVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTN 781

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.028e-19
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGAC--PEINCLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +V +LSQI H HVV LLG C   E+  LVYE++ NG+L  +I+ ++      W +R +I  ++A  L++LH++   PI HRD
Sbjct:  495 EVVILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQHIHEESDDYTKTWGMRLRIAVDIAGALSYLHSAASSPIYHRD 576

HSP 2 Score: 47.3654 bits (111), Expect = 1.028e-19
Identity = 18/42 (42.86%), Postives = 32/42 (76.19%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTSCLP 488
            T+++GT+ Y+DPEY+ +     KSD+Y+FGV++++L+T   P
Sbjct:  610 TVISGTVGYVDPEYYGSSQYTDKSDVYSFGVVLVELITGEKP 651

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: WAKLS_ARATH (Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-19
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGAC--PEINCLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD*QHHRVQRDHS 370
            +V VLSQI H +VV LLG C   E+  LVYE++  GSL D+++      +L W  R +I  EVA  +A+LH+    PI+HRD +   +  D +
Sbjct:  152 EVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITGGSLFDHLHGSMFVSSLTWEHRLEIAIEVAGAIAYLHSGASIPIIHRDIKTENILLDEN 244

HSP 2 Score: 48.521 bits (114), Expect = 1.040e-19
Identity = 19/42 (45.24%), Postives = 32/42 (76.19%), Query Frame = 3

Query:  351 EYRETILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLT 476
            E   T++ GTL Y+DPEY+ T  +  KSD+Y+FGV++++L++
Sbjct:  263 EQLTTMVQGTLGYLDPEYYTTWLLNEKSDVYSFGVVLMELIS 304

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y5189_ARATH (Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 1.334e-19
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +VE+L ++ H H+V L+G C + +   L+YEY+E G L + +  ++    L W  R QI  E A GL +LHN    P+VHRD
Sbjct:  613 EVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMEKGDLRENMSGKHSVNVLSWETRMQIAVEAAQGLEYLHNGCRPPMVHRD 694

HSP 2 Score: 51.9878 bits (123), Expect = 1.334e-19
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS 479
            T++AGT  Y+DPEY+RT  +  KSD+Y+FGV++L+++T+
Sbjct:  729 TVVAGTPGYLDPEYYRTNWLSEKSDVYSFGVVLLEIVTN 767

[Close]

BLAST of CF835710 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.735e-19
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 2

Query:   98 QVEVLSQIRHPHVVLLLGACPEIN--CLVYEYLENGSLEDYIYHQNGKPALPWFVRFQIIFEVACGLAFLHNSKPKPIVHRD 337
            +VE+L ++ H ++V L+G C E +   L+YEY  NG L+ ++  + G   L W  R +I+ E A GL +LH     P+VHRD
Sbjct:  617 EVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQHLSGERGGSPLKWSSRLKIVVETAQGLEYLHTGCKPPMVHRD 698

HSP 2 Score: 52.373 bits (124), Expect = 1.735e-19
Identity = 20/39 (51.28%), Postives = 32/39 (82.05%), Query Frame = 3

Query:  363 TILAGTLHYMDPEYHRTGTIRPKSDLYAFGVIILQLLTS 479
            T +AGT  Y+DPEY+RT  +  KSD+Y+FG+++L+++TS
Sbjct:  733 TAVAGTPGYLDPEYYRTNRLNEKSDVYSFGIVLLEIITS 771

The following BLAST results are available for this feature:

BLAST of CF835710 vs. ExPASy Swiss-Prot

BLAST of CF835710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199


Match Name	E-value	Identity	Description
WAK4_ARATH	1.635e-20	43.90	Wall-associated receptor kinase 4 OS=Arabidopsis t...	[more]
WAK5_ARATH	1.635e-20	45.12	Wall-associated receptor kinase 5 OS=Arabidopsis t...	[more]
HERK_ARATH	2.760e-20	45.12	Receptor-like protein kinase HERK 1 OS=Arabidopsis...	[more]
RLK6_ARATH	3.584e-20	40.24	Receptor-like protein kinase At3g21340 OS=Arabidop...	[more]
Y5182_ARATH	4.663e-20	39.02	Probable LRR receptor-like serine/threonine-protei...	[more]
Y1518_ARATH	6.064e-20	37.23	Probable LRR receptor-like serine/threonine-protei...	[more]
WAKLK_ARATH	1.028e-19	41.46	Putative wall-associated receptor kinase-like 11 O...	[more]
WAKLS_ARATH	1.040e-19	40.86	Putative wall-associated receptor kinase-like 16 O...	[more]
Y5189_ARATH	1.334e-19	40.24	Probable LRR receptor-like protein kinase At1g5189...	[more]
Y2289_ARATH	1.735e-19	39.02	Probable LRR receptor-like serine/threonine-protei...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS03_01M02_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF835710 ID=CF835710; Name=CF835710; organism=Citrus sinensis; type=EST; length=751bp
TTTTTTTTTTTTTTTTTAAAAAAAAATGAGGTGCCTTATAATTTGTGAAT
CCCAAGTTCATAGATATGATCTGCCTTAAAAATTTCCTTCCAATTTGCAG
GTTGAAGTTTTAAGCCAGATACGACATCCACACGTGGTTCTGCTGCTTGG
AGCCTGTCCTGAGATCAATTGTTTGGTCTATGAATACCTGGAAAATGGAA
GCCTGGAGGACTATATTTACCATCAGAATGGGAAGCCTGCTCTTCCTTGG
TTTGTTCGGTTCCAGATAATTTTTGAAGTAGCCTGTGGACTTGCATTCTT
ACACAACTCAAAGCCAAAGCCTATTGTGCATCGAGACTGACAACATCACA
GAGTACAGAGAGACCATTCTTGCTGGTACTCTTCATTACATGGACCCAGA
ATATCACAGAACCGGCACTATTCGTCCCAAATCTGATCTATATGCATTTG
GAGTTATTATACTCCAGTTATTGACATCTTGCCTTCCGAATGGAGTTCTA
CTGATCTTGATACCGAAGTCATGCCGGTTCTCAGGAAACTCAAGGATGTT
GCAGATGCTTGTGTAAAGTTGGAAAGCAGCAATGTTTATGCACCAAGCCA
CTTCTTCTGTCCAATCATTGCTGCTGATGGATTTACTTATGAGCATAGAG
CAATCAAGGCATGGCTTGAGAAACACAATGTATCTCCAGTGACAAAGCTT
AGGCTCCAGCATTTGTCAATTATTCCAAACTACACACTGCGTTCTGCCAT
T