CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = -1
Query:  394 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPG 702
            +N ++  G  IVK A   PLK IA N G  GSV+ EK+    N  YG +AATG Y D++ AGIIDP KVVR  L++A+S A T L ++C   EIKE E  +PG
Sbjct:  432 ENTDKAWGIKIVKNACKVPLKQIAYNAGFEGSVIIEKIKDVDNVNYGFDAATGEYVDMVEAGIIDPTKVVRTALQNAASIAGTMLTAECLVAEIKEKEEKLPG 534          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 699
            ++EEK+GADIVKRAL  PL+ IA N GV GSV+  +V   ++   G NAATG +EDL+AAGIIDP KVVR  L++A+S A   L ++   VE  E + A P    M   G
Sbjct:  432 DEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKD-SDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SYNPX (60 kDa chaperonin 1 OS=Synechococcus sp. (strain WH8102) GN=groL1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 693
            EE +GA+IV  AL  PL  IA+N G NG+VV+E V SRA  + G NAATG+Y D++AAGI+DP KV R  L++A+S A   L ++C   ++ E + A P G  M    + Y
Sbjct:  435 EELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRAISE-GYNAATGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SORC5 (60 kDa chaperonin 1 OS=Sorangium cellulosum (strain So ce56) GN=groL1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 56/122 (45.90%), Postives = 74/122 (60.66%), Query Frame = -1
Query:  334 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY*AN*QGPGG 699
            NDE  VG  +V+RA+  PL+ IA+N GV+G+VV+EKV S A   +G NAAT +YEDL+A G+IDP KVVR  + +A+S A   L ++    E  + E A  GG P    G G      G GG
Sbjct:  432 NDERDVGVRLVRRAVEAPLRQIAQNAGVDGTVVAEKVRSGAP-TFGYNAATDSYEDLLAGGVIDPAKVVRHAISNAASVAALMLTTEALVAEKPKKEKAAAGGAPGGMGGMGGMGGMGGMGG 552          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = -1
Query:  385 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 693
            +E++G DIV+RA+  PL++I +N G  GS+V EK+ +     +G NA T  YEDL+ AG+IDP KV R  L++A+S A   L ++   VE KE +PA P G P
Sbjct:  435 DEQIGVDIVRRAIEEPLRMIVQNAGGEGSIVVEKIRTAKETSFGYNALTDVYEDLVQAGVIDPTKVTRTALQNAASIAGLLLTTEALIVEKKEDKPAAPAGGP 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SYNY3 (60 kDa chaperonin 2 OS=Synechocystis sp. (strain PCC 6803) GN=groL2 PE=1 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 54/112 (48.21%), Postives = 69/112 (61.61%), Query Frame = -1
Query:  370 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 705
            L NDEE+V ADI+ +AL  PL  +A N GV GSV+ EKV   A    G N  TG  EDL+AAGIIDP KVVR  L++A+S A   L ++   + +++PEPA P    M   G
Sbjct:  433 LSNDEERVAADIIAKALEAPLHQLASNAGVEGSVIVEKV-KEATGNQGYNVITGKIEDLIAAGIIDPAKVVRSALQNAASIAGMVLTTE--ALVVEKPEPAAPAMPDMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 54/110 (49.09%), Postives = 70/110 (63.64%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 699
            ++EEK+GADIVKRAL  PL+ IA N G  GSV+  +V   ++   G NAATG +EDL+AAGIIDP KVVR  L++A+S A   L ++   VE  E + A P    M   G
Sbjct:  432 DEEEKIGADIVKRALEAPLRQIADNAGAEGSVIVSRVKD-SDFNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKSAAPADAGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 693
            +EK+G +I+KRA+  PLK IA+N G +  VV+  V    N  +G NAA G Y D+ A GIIDP KV R  L++A S +   L ++    EIKE +PAMP  + M   G
Sbjct:  433 DEKIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 48/111 (43.24%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  367 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGY 699
            ND++++G DIV++AL  PL+ IA+N G +G+VV+ KVL    + +G +A  G ++DL+AAGIIDP KVVR  L+ A+S     + ++    E  EP+PA P     A+ GY
Sbjct:  433 NDDQRIGGDIVRKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAPPAG--ADLGY 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DESOH (60 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 55/112 (49.11%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  364 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE--IKEPEPAMPGGNPMANSGYG 693
            EEK+G  +V RA+  PL+ IA N GV GSVV EKV +     +G NAATG+Y DL+AAG+IDP KVVR  L++A S A   L ++    E   KE   AMPGG      G G
Sbjct:  434 EEKLGVKVVMRAIEEPLRRIANNAGVEGSVVIEKVKNETG-SFGYNAATGDYGDLIAAGVIDPTKVVRFALQNACSVASVMLTTEAMIAEKPSKEEPAAMPGGGMGGMGGMG 544          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SULSY1.461e-1849.5160 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH602_ANAVT1.461e-1850.0060 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH601_SYNPX1.461e-1846.8560 kDa chaperonin 1 OS=Synechococcus sp. (strain W... [more]
CH601_SORC52.493e-1845.9060 kDa chaperonin 1 OS=Sorangium cellulosum (strai... [more]
CH60_GEMAT3.256e-1845.6360 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH602_SYNY33.256e-1848.2160 kDa chaperonin 2 OS=Synechocystis sp. (strain P... [more]
CH602_ANASP3.256e-1849.0960 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH60_WOLSU4.252e-1844.4460 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH602_GLUDA5.553e-1843.2460 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH60_DESOH7.253e-1849.1160 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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