CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PSEPW (60 kDa chaperonin OS=Pseudomonas putida (strain W619) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  385 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 702
            DN+++ VG  +++RA+  PL+ I  N G   SVV++KV  + +  YG NAATG Y D++  GI+DP KV R  L+ A+S     + ++    ++ E +PA  GG P
Sbjct:  432 DNEDQNVGIALLRRAVEAPLRQITANAGDEPSVVADKV-KQGSGNYGYNAATGEYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVADLPEDKPA--GGMP 534          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PSEF5 (60 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 702
            DN ++ VG  +++RA+  PL+ I  N G   SVV +KV   A + +G NAAT  Y D++  GI+DP KV R  L+ ASS     L ++    EI E +PA  G   M   G
Sbjct:  432 DNADQDVGIAVLRRAIEAPLRQIVANSGDEPSVVVDKVKQGAGN-FGYNAATSEYGDMIEMGILDPTKVTRSALQAASSIGGLILTTEAAVAEIVEDKPAAGGMPDMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 47/111 (42.34%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  370 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE---PAMPGGNPMANSG 693
            +E  G  +V RAL  P++ IA+N G  GSV+ EK L   +   G NAATG Y D++A GI+DP KV R  L++A+S +  FL ++   V   +PE   PAMP    M   G
Sbjct:  434 DEATGVKLVLRALEAPVRQIAENAGEEGSVIVEK-LKNESVGVGYNAATGEYVDMIAHGIVDPAKVTRSALQNAASVSAMFLTTE--AVIADKPEKDAPAMPDMGGMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLOTE (60 kDa chaperonin OS=Clostridium tetani GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  367 KVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEP-EPAMPGGNPMANSGY 687
            K+G DIVK++L  P++ IA N GV GS+V EKV   +    G +A    Y +++ AGI+DP KV R  L++A+S A TFL ++    +I E  +  MPG   M +  Y
Sbjct:  437 KLGIDIVKKSLEEPVRQIACNAGVEGSIVIEKV-KHSEAGIGYDALNNEYVNMIKAGIVDPTKVSRSALQNAASVASTFLTTEAAIADIPEKNDTPMPGAPGMMDGMY 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLOD6 (60 kDa chaperonin OS=Clostridium difficile (strain 630) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = -1
Query:  385 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE----PAMPGGNP 693
            E K+GA IVK+AL  PL+ IA N G+ G+V+ + V++ +  + G +A    Y +++ AGI+DP KV R  L++A+S A TFL ++    ++ E E    P M GG P
Sbjct:  434 EVKLGAQIVKKALEEPLRQIAINAGLEGAVIVQNVVN-SEAETGFDALNEKYVNMIEAGIVDPTKVSRSALQNAASIASTFLTTEAAVADLPEKEDAGMPGMGGGMP 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLOB8 (60 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 702
            D  + ++G +I+ ++L  P++ IA N GV GSV+ EKV   +    G +A  G Y +++  GI+DP KV R  L++A+S A TFL ++    +I   E  MPG   M   G
Sbjct:  430 DVADTQIGINIIVKSLEEPVRQIATNAGVEGSVIIEKV-KNSEPGIGYDALHGEYINMIKGGIVDPTKVTRSALQNAASVASTFLTTEAAVADIPAKETPMPGAPGMGMDG 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLAMS (60 kDa chaperonin OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  385 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 693
            +E  GA+IV+ A+  PLK IA N G+   VV+E+V +  +  +G NAATG Y D++AAGI DP KV R  L +A+S A  FL ++    +  E  PA P G+P
Sbjct:  433 DEATGANIVRVAVDAPLKQIALNAGLEPGVVAERVRNLPSG-HGLNAATGEYVDMLAAGINDPVKVTRSALLNAASIAGLFLTTEAVVADKPEKNPA-PAGDP 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CLAM3 (60 kDa chaperonin OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  385 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNP 693
            +E  GA+IV+ A+  PLK IA N G+   VV+E+V +  +  +G NAATG Y D++AAGI DP KV R  L +A+S A  FL ++    +  E  PA P G+P
Sbjct:  433 DEATGANIVRVAVDAPLKQIALNAGLEPGVVAERVRNLPSG-HGLNAATGEYVDMLAAGINDPVKVTRSALLNAASIAGLFLTTEAVVADKPEKNPA-PAGDP 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  364 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE-PAMPGGNPMANSGYG 693
            +E  G +IV RAL  P++ IA N G+ GSVV E+ L       G NAATG + +++ +GI+DP KV R  L++A+S A  FL ++    +  EP  PAMP    M   G G
Sbjct:  432 DEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLESGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_BACCR (60 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  364 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPE-PAMPGGNPMANSGYG 693
            +E  G +IV RAL  P++ IA N G+ GSVV E+ L       G NAATG + +++ +GI+DP KV R  L++A+S A  FL ++    +  EP  PAMP    M   G G
Sbjct:  432 DEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLESGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PSEPW1.565e-1238.6860 kDa chaperonin OS=Pseudomonas putida (strain W6... [more]
CH60_PSEF51.565e-1239.6460 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH60_EXISA1.565e-1242.3460 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH60_CLOTE1.565e-1240.7460 kDa chaperonin OS=Clostridium tetani GN=groL PE... [more]
CH60_CLOD61.565e-1240.1960 kDa chaperonin OS=Clostridium difficile (strain... [more]
CH60_CLOB81.565e-1236.9460 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH60_CLAMS1.565e-1244.6660 kDa chaperonin OS=Clavibacter michiganensis sub... [more]
CH60_CLAM31.565e-1244.6660 kDa chaperonin OS=Clavibacter michiganensis sub... [more]
CH60_BACWK1.565e-1241.4460 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH60_BACCR1.565e-1241.4460 kDa chaperonin OS=Bacillus cereus (strain ATCC ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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