CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_AZOC5 (60 kDa chaperonin 2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = -1
Query:  391 LDNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKE---PEPAMPGG 705
            ++N ++K G DIV+RA+  P + I  N G +GSVV  K+L    + +G NA TG Y D++A+GIIDP KVVR  L+ A+S +   + ++   VE+ +     PAMPGG
Sbjct:  431 VENTDQKTGIDIVRRAIQAPARQIVANAGDDGSVVVGKILENETYTFGYNAQTGEYVDMVASGIIDPAKVVRTALQDAASISALIITTEALVVELPKKAAAAPAMPGG 538          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGG 699
            ND+++ G +IV+RAL  P + IA+N G   S+V  K+L +    YG NA TG Y D++  GIIDP KVVR  L+ A+S A   + ++    E+ K+  PAMPGG
Sbjct:  432 NDDQEAGINIVRRALQAPARQIAENAGDEASIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_PROM3 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.368e-16
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  361 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 693
            EE +GA+IV+ +L  PL  IA+N G NG+VV+E V SR     G NAATG+Y D++AAGI+DP KV R  L++A+S A   L ++C   ++ E + A P G       + Y
Sbjct:  435 EELIGANIVEASLAAPLMRIAENAGANGAVVAENVKSRPISD-GYNAATGDYIDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGGMGGDFDY 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = -1
Query:  382 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 693
            EE +GA+IV +AL  PLK IA+N G NGSVV+E V  +   + G NAA+  Y D++AAGIIDP KV R  L++A+S A   L ++C  V++ E + A P G  M
Sbjct:  435 EELIGANIVAQALDAPLKRIAENAGANGSVVAENVRHKPFSE-GFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECIVVDLPEKKEAAPAGGGM 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_PELLD (60 kDa chaperonin OS=Pelodictyon luteolum (strain DSM 273) GN=groL PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 49/114 (42.98%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPGV-NGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DN+++K G DI++RAL  PL+ I  N G  +G+VV E+V  +    +G NA T  YEDL+AAG++DP KV R  LE+A+S A   L ++    +IKE +  MP   P    G G
Sbjct:  432 DNEDQKTGIDIIRRALEEPLRQIVANTGTTDGAVVLERV-KQGEGDFGFNARTEQYEDLVAAGVVDPTKVTRSALENAASVASILLTTEACITDIKEDKSDMPAMPPGGMGGMG 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = -1
Query:  397 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMP 699
            ND+++ G DIV+RAL  P + IA N G +G+ +  K+L  +++ +G NAATG YEDL+ AG+IDP KVVR  L+ A+S A   + ++    E+ + E A P
Sbjct:  433 NDDQQSGIDIVRRALRAPARQIADNAGEDGAWIVGKLLESSDYNWGFNAATGEYEDLVKAGVIDPAKVVRTALQDAASVAALLITTEALVAELPKEEKAAP 533          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_RHOPB (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGG 702
            DN + + G +IV +AL  P++ IA+N GV GS+V  K+L   +  +G +A T  Y D++A GI+DP KVVR  L+ ASS A   + ++C   E+ ++  PAMPGG
Sbjct:  432 DNPDVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDASSVAALLVTTECMVAEMPRDAAPAMPGG 536          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_RHOPS (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 46/112 (41.07%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  370 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGGNPMANSG 702
            DN + + G +IV +AL  P++ IA+N GV GS+V  K+L   +  +G +A T  Y D++A GI+DP KVVR  L+ A+S A   + ++    E+ +E  PAMPGG  M   G
Sbjct:  432 DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMLAKGIVDPAKVVRTALQDAASVAALLVTTEAMVAELPREAAPAMPGGGGMGGMG 543          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 49/110 (44.55%), Postives = 64/110 (58.18%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 699
            ++ EK G DIV+RAL  PL+ IA N G   S+V  KV    +  +G NAATG+YEDL+ +G+IDP KV R  L++ASS A   L +     E  + E A P G  M   G
Sbjct:  432 SEGEKFGLDIVRRALEEPLRQIAGNGGYEASIVVNKVKESKDTNFGFNAATGDYEDLVKSGVIDPTKVSRSALQNASSVASLMLTTMALVAEKPKEESAAPAGGGMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = -1
Query:  391 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGG 699
            N EE+VGADIV RAL  PL  IA N G+ GSVV EKVL +    +G +A TG Y D+ A GI+DP KVVR  L++A+S A  +L ++   + +++PEP    G
Sbjct:  433 NAEEQVGADIVCRALQAPLYQIAHNAGLEGSVVVEKVLEK-EMPFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAAMYLTTE--AIVVEKPEPKTKTG 532          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_AZOC51.368e-1642.5960 kDa chaperonin 2 OS=Azorhizobium caulinodans (s... [more]
CH601_RHIEC1.368e-1644.2360 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH601_PROM31.368e-1644.1460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_SYNR31.786e-1648.0860 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH60_PELLD1.786e-1642.9860 kDa chaperonin OS=Pelodictyon luteolum (strain ... [more]
CH602_SPHAL1.786e-1643.5660 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH602_RHOPB1.786e-1642.8660 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_RHOPS2.333e-1641.0760 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_ANADF2.333e-1644.5560 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]
CH601_SYNJA2.333e-1648.5460 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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