CF835718

Overview
NameCF835718
Unique NameCF835718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:165..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH604_RHIME (60 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGG 702
            +ND++  G +IV+RAL  P + I +N G   S+V  K+L +    +G NA TG Y D++A GIIDP KVVR  L+ A+S A   + ++    E+ K+  PAMPGG
Sbjct:  431 ENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = -1
Query:  382 EEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPM 693
            EE +GA+IV+ AL  PL  IA+N G NG+VV+E V S+  +  G NAATG Y D+++AGI+DP KV R  L++A+S A   L ++C   ++ E + + P G  M
Sbjct:  435 EELIGANIVEAALTSPLMRIAENAGANGAVVAENVKSKPVND-GYNAATGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDSSPAGGGM 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH602_MYXXD (60 kDa chaperonin 2 OS=Myxococcus xanthus (strain DK 1622) GN=groL2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = -1
Query:  370 EKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSG 690
            EK G DI++RA+  PL+ I  N G+ GSVV  KV   ++  +G NAATG YEDL+AAG+IDP KV R  L++A+S +   L ++    E  + E  +P G  M   G
Sbjct:  434 EKFGVDIIRRAVEEPLRQIVGNGGLEGSVVVNKV-KESSGPFGFNAATGTYEDLLAAGVIDPAKVSRTALQNAASVSSLMLTTEAMVAERPKEEKDLPAGGGMGGMG 539          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGG 702
            +ND++  G +IV+RAL  P + I +N G   S+V  K+L +    +G NA TG Y D++A GIIDP KVVR  L+ A+S A   + ++    E+ K+  PAMPGG
Sbjct:  431 ENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_RHIME (60 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEI-KEPEPAMPGG 702
            +ND++  G +IV+RAL  P + I +N G   S+V  K+L +    +G NA TG Y D++A GIIDP KVVR  L+ A+S A   + ++    E+ K+  PAMPGG
Sbjct:  431 ENDDQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_PROM2 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9215) GN=groL1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 50/113 (44.25%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  370 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPG---GNPMANSG 699
            +D+ + G +I+K AL  P K IAKN G NG VV  ++  R N   G NA +G YEDL  +GI+DP KV+R  L+ + S A   L ++    +I EPEPA PG   G+PM   G
Sbjct:  432 SDDLRTGINIIKEALLEPTKQIAKNAGFNGDVVIAEI-KRLNK--GFNANSGKYEDLKNSGILDPTKVIRLALQDSVSIAAMLLTTEVAIADIPEPEPAAPGGPSGDPMGGMG 541          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH601_ANASP (60 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 7120) GN=groL1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 49/112 (43.75%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  361 DEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYGY 696
            DEE  GA IV RAL  PLK IA+N G NG+V++E+V  +A    G NAAT  + D+  AGI+DP KV R  L++A+S A   L ++C  V+  EP+   P G       + Y
Sbjct:  434 DEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEKA-FNVGFNAATNEFVDMFEAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEPKDNAPAGAGAGGGDFDY 544          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_GLUOX (60 kDa chaperonin OS=Gluconobacter oxydans GN=groL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = -1
Query:  391 DNDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVE--IKEPEPAMPGG 702
            DND+++VG +IV++AL  PL+ IA N G +G+V++ KVL    + +G +A  G Y+DL+AAGIIDP KVVR  L+ A+S     + ++    E   K+   A PGG
Sbjct:  432 DNDDQRVGGEIVRKALQAPLRQIAFNAGEDGAVIAGKVLENEGYVFGFDAQKGEYKDLVAAGIIDPTKVVRTALQDAASVGGLLITTEAMVAERPEKKAPAAAPGG 537          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_DESMR (60 kDa chaperonin OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=groL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = -1
Query:  364 NDEEKVGADIVKRALCYPLKLIAKNPGVNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 699
            +D+E+ G +IV+RA+  PL+ I+ N G  GS+V  KV       +G NAATG YEDL+ AG+IDP KV R  L+++SS A   L ++    E  EP+  MP   PM   G G
Sbjct:  433 DDDEQSGIEIVRRAIEEPLRQISGNAGFEGSIVVAKVRD-GKDGFGFNAATGEYEDLIKAGVIDPKKVTRIALQNSSSVAGLLLTTEAAIAEKPEPKKDMP---PMPGGGMG 540          
BLAST of CF835718 vs. ExPASy Swiss-Prot
Match: CH60_CHLP8 (60 kDa chaperonin OS=Chlorobaculum parvum (strain NCIB 8327) GN=groL PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = -1
Query:  364 DNDEEKVGADIVKRALCYPLKLIAKNPG-VNGSVVSEKVLSRANHKYGSNAATGNYEDLMAAGIIDPPKVVRCCLEHASSGAKTFLMSDCGGVEIKEPEPAMPGGNPMANSGYG 702
            DND++K G DI++RAL  PL+ I  N G  +G+VV EKV S     YG NA T  YE+L+ AG++DP KV R  LE+A+S A   L ++    ++ E +  MP   P    G G
Sbjct:  432 DNDDQKTGIDIIRRALEEPLRQIVANTGTTDGAVVLEKVRS-GEGDYGFNARTEEYENLVDAGVVDPTKVTRSALENAASVASILLTTEAAITDLPEDKADMPAMPPGGMGGMG 544          
The following BLAST results are available for this feature:
BLAST of CF835718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH604_RHIME3.980e-1642.8660 kDa chaperonin 4 OS=Rhizobium meliloti GN=groL4... [more]
CH602_PROM13.980e-1645.1960 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_MYXXD3.980e-1643.9360 kDa chaperonin 2 OS=Myxococcus xanthus (strain ... [more]
CH601_SINMW3.980e-1642.8660 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
CH601_RHIME3.980e-1642.8660 kDa chaperonin 1 OS=Rhizobium meliloti GN=groL1... [more]
CH601_PROM23.980e-1644.2560 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_ANASP3.980e-1643.7560 kDa chaperonin 1 OS=Anabaena sp. (strain PCC 71... [more]
CH60_GLUOX5.198e-1643.4060 kDa chaperonin OS=Gluconobacter oxydans GN=groL... [more]
CH60_DESMR5.198e-1643.7560 kDa chaperonin OS=Desulfovibrio magneticus (str... [more]
CH60_CHLP85.198e-1642.9860 kDa chaperonin OS=Chlorobaculum parvum (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835718 ID=CF835718; Name=CF835718; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTCTTTAAAGTCCAGACCAAGAGTTATAACATTTA
AGCTCCCCTAACAGGGAACAGTAACAAATGGGAGTACCCCCAAAATTAAT
ATCAAACTGGGAAGGAGATGAGCAAAATAAAATTTCTTTCCCTCAAAAAG
TTCAAAATCATTGCAATGGGACATCTAATTGCAAATTAATACGAGCCGTA
CTCTGGCAAGCTATCCTCCCCAAAATCCATAAACTCTACTAAGTCGAGTA
ATTGAATTTACAAAAAAAAAAAAACCCAACGCTGGCAAACTGAAAAATAG
TTGCTATAACGAAGTCAAAACCTTATTTGCTTGCCCCCCGGGACCTTGTT
AATTAGCTTAGTATCCATATCCTGAGTTGGCCATAGGGTTACCCCCAGGC
ATAGCGGGTTCAGGCTCCTTGATCTCAACCCCCCCACAGTCGGACATCAA
GAAGGTTTTTGCCCCCGAGGAAGCATGCTCCAAGCAACATCTAACCACCT
TGGGAGGATCAATAATTCCTGCAGCCATTAAATCTTCGTAGTTTCCAGTT
GCAGCATTGGATCCATATTTATGATTGGCCCTTGAAAGCACCTTCTCGCT
GACCACACTTCCATTAACACCGGGATTTTTGGCAATTAATTTCAGGGGGT
AGCACAGAGCTCTTTTAACAATATCTGCTCCAACCTTTTCTTCATCATTA
TCAAG
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