CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.573e-30
Identity = 70/150 (46.67%), Postives = 101/150 (67.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            +++KLR+EDA NAT AA           TL+ LS+ + AIKE L++ +E++GADIV++AL  P  LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  P   P
Sbjct:  394 EDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSE-WEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPTAAP 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 9.506e-30
Identity = 71/147 (48.30%), Postives = 99/147 (67.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            +++KLR+EDA NAT AA            L+ LS+ + AIKET ++ +E++GADIV++AL  P  LIA+NAGV G VV EK++ SD  + GYNA T  YE+L  AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  PA
Sbjct:  434 EDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSD-WENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 577          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.506e-30
Identity = 74/144 (51.39%), Postives = 97/144 (67.36%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 434
            K++KLR+EDALNAT+AA           TLL LS  + A K  L N EE+VGA+IV RAL  PL  IA NAG+ GSVV EKVL  +   +G++A TG Y D+ A GI+DP KVVR  L++A+S+A  +L ++ +VVE  EP+PA
Sbjct:  389 KDRKLRIEDALNATRAAVEEGIVPGGGATLLHLSKGIPAFKAKL-NAEEQVGAEIVYRALQAPLFQIAHNAGLEGSVVVEKVLEKEM-PFGFDALTGTYVDMFAQGIVDPAKVVRSALQNAASIAGMYLTTEAIVVEKPEPKPA 530          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SYNS9 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain CC9902) GN=groL1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  L+  ++       + EE +GA+IV  AL  PL  IA+NAG NG+VV+E V S  N++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEEWANGNLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKSRSNNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGGGMGGGDFDY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 76/155 (49.03%), Postives = 100/155 (64.52%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            K++KLR+EDALNATKAA           TL+ L+  ++++K  L  DEEKVGAD+V  AL  PL  IA NAG  G+VV EKV  +D   YGYNA T  YED++AAG++DP KVVR  L++A S+A   L ++ +VV+  +PEPA  A   M   G
Sbjct:  388 KDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQL-KDEEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDAD-FSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEALVVD--KPEPAGAAAPDMGGMG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SULSY (60 kDa chaperonin OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=groL PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP-AGNPMDNSGY 470
            KEKK RV+DA++ATKAA            + R S  +  IKE  +N ++  G  IVK A   PLK IA NAG  GSV+ EK+   DN  YG++AATG Y D++ AGIIDPTKVVR  L++A+S+A T L ++C+V EIKE E  +P AG  M +  +
Sbjct:  390 KEKKDRVDDAVHATKAAVEEGIVPGGGIAIFRASRALCNIKE--ENTDKAWGIKIVKNACKVPLKQIAYNAGFEGSVIIEKIKDVDNVNYGFDAATGEYVDMVEAGIIDPTKVVRTALQNAASIAGTMLTAECLVAEIKEKEEKLPGAGGGMGDMDF 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29
Identity = 68/150 (45.33%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RVEDAL+AT+AA            L+R    +  +K  +   +E++G DIV+RA+  PL++I +NAG  GS+V EK+ ++    +GYNA T  YEDL+ AG+IDPTKV R  L++A+S+A   L ++ ++VE KE +PA PAG P
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRAQHVLKDVK--VAERDEQIGVDIVRRAIEEPLRMIVQNAGGEGSIVVEKIRTAKETSFGYNALTDVYEDLVQAGVIDPTKVTRTALQNAASIAGLLLTTEALIVEKKEDKPAAPAGGP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_GLUDA (60 kDa chaperonin 1 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.621e-29
Identity = 72/156 (46.15%), Postives = 105/156 (67.31%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 467
            KE+K RV+DAL+AT+AA            L R S+ +  +     ND+++VGA+I+++AL  PL+ IA NAG +G+V++ KVL S+++ YG++A  G+Y+DL+AAGIIDPTKVVR  L+ ASSVA   + ++ +V E  E + PAMPAG  M   G
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGTALARASTALGNLH--FHNDDQRVGAEIIRKALQAPLRQIAHNAGEDGAVIAGKVLESNDYNYGFDAQIGDYKDLVAAGIIDPTKVVRTALQDASSVAGLLITTEAMVAEKPEKKAPAMPAGGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SOLUE (60 kDa chaperonin OS=Solibacter usitatus (strain Ellin6076) GN=groL PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.118e-29
Identity = 72/150 (48.00%), Postives = 96/150 (64.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RVEDAL+AT+AA            LLR +  +   K  +D DE+ +G  IVKRA   PL+ I  N+G  G++V +KV  + N+ YGYNAAT  YEDL+AAG+IDPTKV R  L+HA+S+A   L ++ ++ EI E + A PAG P
Sbjct:  388 KEKKARVEDALHATRAAVEEGIVPGGGVALLRAAKALATFK--VDGDEQ-IGVSIVKRACEEPLRQIVSNSGTEGAIVVDKVRENANNNYGYNAATDTYEDLVAAGVIDPTKVTRSALQHAASIAGLMLTTEAMIAEIPEKKSA-PAGGP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.766e-29
Identity = 70/158 (44.30%), Postives = 101/158 (63.92%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  L+  ++    +  + EE +GA+IV  AL  PL  IA+NAGVNG+VV+E V +   ++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASTLSGEELIGANIVAAALTAPLMRIAENAGVNGAVVAENVKAKSFNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUB1_BRANA5.573e-3046.67RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH9.506e-3048.30RuBisCO large subunit-binding protein subunit alph... [more]
CH602_SYNJB9.506e-3051.3960 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_SYNS91.242e-2944.9460 kDa chaperonin 1 OS=Synechococcus sp. (strain C... [more]
CH601_ACAM11.242e-2949.0360 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH60_SULSY1.621e-2947.7760 kDa chaperonin OS=Sulfurihydrogenibium sp. (str... [more]
CH60_GEMAT1.621e-2945.3360 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH601_GLUDA1.621e-2946.1560 kDa chaperonin 1 OS=Gluconacetobacter diazotrop... [more]
CH60_SOLUE2.118e-2948.0060 kDa chaperonin OS=Solibacter usitatus (strain E... [more]
CH602_SYNPW2.766e-2944.3060 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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