CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 65/143 (45.45%), Postives = 96/143 (67.13%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP 431
            ++++LR+EDA NAT AA             + LS+ V AIKET+++ +E++GADI+++AL  P  LIA NAGV G VV EK+  S+  + GYNA T  YE+L+ +G+IDP KV RC L++A+SV+   L +  +VVE  +P+P
Sbjct:  390 EDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESE-WEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAIVVEKPKPKP 531          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESVV (60 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 69/155 (44.52%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            L+R++  +D IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  390 KEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA--DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESVH (60 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groL PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.216e-28
Identity = 69/155 (44.52%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            L+R++  +D IK    +D+E  G +I++RA+  PL+ IA NAG  GS+V E+V    +  +G+NAATG YEDL+  G+IDP KV R  L++A+SVA   L ++C + E  EP+  MP    M   G
Sbjct:  390 KEKKDRVEDALNATRAAVEEGIVPGGGTALVRVAKVLDDIKPA--DDDETAGVNIIRRAIEEPLRQIASNAGFEGSIVVERVREGKDG-FGFNAATGEYEDLIGVGVIDPKKVTRIALQNAASVASLLLTTECAIAEKPEPKKDMPMPGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACV8 (60 kDa chaperonin OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=groL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 69/150 (46.00%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RV+DAL AT+AA             +R S  ++ +K   DN++E  G +I+KRA+  PL+ I  NAG  G+VV +KV       +GYNA T  YE+L AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  390 KEKKDRVDDALCATRAAIEEGIVPGGGVAYIRASEALEGLKG--DNEDETTGIEIIKRAIEEPLRQIVANAGKEGAVVVQKVREGKGD-FGYNARTDVYENLHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACFR (60 kDa chaperonin OS=Bacteroides fragilis GN=groL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 69/150 (46.00%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RV+DAL AT+AA             +R    +D +K   +ND+E  G  I+KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  390 KEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKG--ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACFN (60 kDa chaperonin OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=groL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 69/150 (46.00%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RV+DAL AT+AA             +R    +D +K   +ND+E  G  I+KRA+  PL+ I  NAG  G+VV +KV S     +GYNA T  YE++ AAG++DP KV R  LE+A+S+A  FL ++CV+VE KE +P MP G P
Sbjct:  390 KEKKDRVDDALRATRAAIEEGIVAGGGVAYIRAIESLDGLKG--ENDDETTGIAIIKRAIEEPLRQIVANAGKEGAVVVQKV-SEGKGDFGYNARTDVYENMHAAGVVDPAKVTRVALENAASIAGMFLTTECVIVEKKEDKPEMPMGAP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AZOPC (60 kDa chaperonin OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=groL PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 70/155 (45.16%), Postives = 97/155 (62.58%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA             +R  S ++  K    N++E  G +IVKRA+  PL+ I +NAG  G+V++++V   +   +GYNA TG YEDL  AG+IDPTKV R  LE+A+S+A   L ++CV+ E+KE  PA PA  PM   G
Sbjct:  390 KEKKDRVDDALSATRAAIEEGTVPGGGVAYVRAISILEGFKGI--NEDETTGIEIVKRAIEEPLRQIVENAGKEGAVIAQRV-KEEKDDFGYNARTGIYEDLYVAGVIDPTKVARVALENAASIAGMLLTTECVITEVKEENPA-PAMPPMGGGG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNSC (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9605) GN=groL2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 68/158 (43.04%), Postives = 99/158 (62.66%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  L+  ++    +  + EE +GA+IV  AL  PL  IA+NAG NG+VV+E V +    + G+NAA+G Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALEQWAASSLSGEELIGANIVAAALTAPLMRIAENAGANGAVVAENVKARAGAE-GFNAASGEYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_ANADE (60 kDa chaperonin 2 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=groL2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.813e-28
Identity = 71/155 (45.81%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA             LR    ++ +K    N+ EKVG DIV+RA+  PL+ I+ N G  GS+V  KV  +    +G+NAATG YEDL+ AG+IDPTKV R  L++A+SVA   L +  +V E  + E A PAG  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVAYLRCVKALEGVKV---NEGEKVGLDIVRRAIEEPLRQISGNGGYEGSIVVNKVKEAKEAAFGFNAATGEYEDLVKAGVIDPTKVSRSALQNAASVASLMLTTMAMVAEKPKEESAAPAGGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.897e-28
Identity = 71/155 (45.81%), Postives = 95/155 (61.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+ATKAA            L+R ++KV   K  L  DE K+G +I+KRA+  PLK IA+NAG +  VV+  V  + N  +G+NAA G Y D+ A GIIDP KV R  L++A SV+   L ++  + EIKE +PAMP  + M   G
Sbjct:  390 KEKKDRVDDALSATKAAVEEGIVIGGGAALIRAAAKV---KLELSGDE-KIGYEIIKRAISAPLKQIAQNAGFDAGVVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_WHEAT5.216e-2845.45RuBisCO large subunit-binding protein subunit alph... [more]
CH60_DESVV5.216e-2844.5260 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]
CH60_DESVH5.216e-2844.5260 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH60_BACV86.813e-2846.0060 kDa chaperonin OS=Bacteroides vulgatus (strain ... [more]
CH60_BACFR6.813e-2846.0060 kDa chaperonin OS=Bacteroides fragilis GN=groL ... [more]
CH60_BACFN6.813e-2846.0060 kDa chaperonin OS=Bacteroides fragilis (strain ... [more]
CH60_AZOPC6.813e-2845.1660 kDa chaperonin OS=Azobacteroides pseudotrichony... [more]
CH602_SYNSC6.813e-2843.0460 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_ANADE6.813e-2845.8160 kDa chaperonin 2 OS=Anaeromyxobacter dehalogena... [more]
CH60_WOLSU8.897e-2845.8160 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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