CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROMP (60 kDa chaperonin 1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMDNSG 467
            K KKLR+ED+LNATKAA           TL+ +S+++   ++ + +D+   G DI+  AL  P K IAKNAG NG VV   +        G+NA  G YE+L  +GI+DPTKV+R  L+ + S+A   + ++  V +I EPE  P  P  +PM   G
Sbjct:  388 KYKKLRIEDSLNATKAAIEEGVVSGGGQTLIEISNELSNSRKEI-SDDLTTGIDIITNALLEPTKQIAKNAGFNGDVVIADIKRLGK---GFNANNGEYENLNESGILDPTKVIRLALQDSVSIAAMIITTEVAVADIPEPEAAPGGPGADPMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_VIBHB (60 kDa chaperonin OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA-MPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  P++ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SVA   + ++ +V ++ + + A MP    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKIVDLEG--DNEEQNVGIRVALRAMEAPIRQITKNAGDEESVVANNVKAGEG-SYGYNAATGEYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKDGAGMPDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRPZ (60 kDa chaperonin OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRPM (60 kDa chaperonin OS=Streptococcus pyogenes serotype M28 GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  390 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRPG (60 kDa chaperonin OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRPF (60 kDa chaperonin OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  390 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRPD (60 kDa chaperonin OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  390 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRPC (60 kDa chaperonin OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  390 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRPB (60 kDa chaperonin OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=groL PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  390 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRP6 (60 kDa chaperonin OS=Streptococcus pyogenes serotype M6 GN=groL PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KE KLR+EDALNAT+AA            L+ +  KV A++  L+ D+   G +IV RAL  P++ IA NAG  GSVV +K+ +S     G+NAATG + D++  GIIDP KV R  L++A+SVA   L ++ VV    E   P PAMPAG
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVAGGGTALITVIEKVAALE--LEGDDA-TGRNIVLRALEEPVRQIALNAGYEGSVVIDKLKNSPAGT-GFNAATGEWVDMIKTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPAAPAPAMPAG 534          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_PROMP6.598e-2340.1360 kDa chaperonin 1 OS=Prochlorococcus marinus sub... [more]
CH60_VIBHB8.618e-2341.0360 kDa chaperonin OS=Vibrio harveyi (strain ATCC B... [more]
CH60_STRPZ8.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPM8.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPG8.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPF8.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPD8.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPC8.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRPB8.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]
CH60_STRP68.618e-2345.7060 kDa chaperonin OS=Streptococcus pyogenes seroty... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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