CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SORC5 (60 kDa chaperonin 1 OS=Sorangium cellulosum (strain So ce56) GN=groL1 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 72/157 (45.86%), Postives = 99/157 (63.06%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L R ++ ++++K    NDE  VG  +V+RA+  PL+ IA+NAGV+G+VV+EKV S     +GYNAAT +YEDL+A G+IDP KVVR  + +A+SVA   L ++ +V E  + E A   G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVVGGGVALFRAAASLESLKF---NDERDVGVRLVRRAVEAPLRQIAQNAGVDGTVVAEKVRSGAP-TFGYNAATDSYEDLLAGGVIDPAKVVRHAISNAASVAALMLTTEALVAEKPKKEKAAAGGAPGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_GLUDA (60 kDa chaperonin 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.982e-27
Identity = 65/146 (44.52%), Postives = 97/146 (66.44%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KE+K RV+DALNAT+AA            L R +  V  ++    ND++++G DIV++AL  PL+ IA+NAG +G+VV+ KVL +  + +G++A  G ++DL+AAGIIDPTKVVR  L+ A+SV    + ++ +V E  EP+PA P
Sbjct:  390 KERKDRVDDALNATRAAVEEGIVPGGGTALARAAEVVARLQ--FHNDDQRIGGDIVRKALQAPLRQIAENAGEDGAVVAGKVLENGAYNFGFDAQIGEFKDLVAAGIIDPTKVVRTALQDAASVGSLLITTEVLVTEKAEPKPAAP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_GLOVI (60 kDa chaperonin 1 OS=Gloeobacter violaceus GN=groL1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.982e-27
Identity = 68/148 (45.95%), Postives = 100/148 (67.57%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            K++KLR+EDA+NATKAA            LL L++ +    ++L   EEK+GA I+++AL  PL+ IA+NAG+ GSV++EKV + +   +G+NA T  YEDL+AAGIIDP KV R  L++A+S+A   L ++C+VV+ K  +   PAG
Sbjct:  388 KDRKLRIEDAVNATKAAIAEGIVPGGGTALLHLAAGMGGFIDSLSG-EEKIGARIIQKALEGPLRQIAENAGLEGSVIAEKVRNLE-FNFGFNAMTNEYEDLVAAGIIDPVKVTRSALQNAASIAAMVLTTECIVVD-KPEDDKTPAG 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THELT (60 kDa chaperonin OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=groL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 70/150 (46.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV----EIKEPEPAMP 440
            KEKK R+EDAL+AT+AA           TL+R    V+ + + LD DE KVGA IV +AL  P++ IA+NAG +G+V+ EK+L+S    YG++A  G Y D+  AGIIDP KV R  L++A+S+A   L ++ +VV    E KE  PAMP
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGVTLIRSRKAVEDVLKELDGDE-KVGAMIVYKALEAPIRQIAENAGYDGAVIIEKILASKEESYGFDALKGEYTDMFKAGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKEAAPAMP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SYNR3 (60 kDa chaperonin OS=Synechococcus sp. (strain RCC307) GN=groL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 72/154 (46.75%), Postives = 97/154 (62.99%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHK---YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            K+KKLR+EDA+NATKAA           TL  L+  +        + EE +GA+IV +AL  PLK IA+NAG NGSVV+E V     HK    G+NAA+  Y D++AAGIIDP KV R  L++A+S+A   L ++C+VV++ E + A PAG  M
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPALTEWANQNLSGEELIGANIVAQALDAPLKRIAENAGANGSVVAENV----RHKPFSEGFNAASNEYVDMLAAGIIDPAKVTRSGLQNAASIAGMVLTTECIVVDLPEKKEAAPAGGGM 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESDG (60 kDa chaperonin OS=Desulfovibrio desulfuricans (strain G20) GN=groL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 71/156 (45.51%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            L+R    +D +K    +D+E  G  I++RA+  PL+ IA NAG  GS++ EKV    +  +G+NAATG +EDL+AAG+IDP KV R  L++A+SVA   L ++C + E  KE  PA PA   M   G
Sbjct:  390 KEKKDRVEDALNATRAAVEEGIVPGGGTALVRCCKVLDDVKPA--DDDEAAGVTIIRRAIEEPLRQIAANAGFEGSIICEKVKEGKD-AFGFNAATGEFEDLIAAGVIDPKKVSRIALQNAASVASLLLTTECAIAEKPKEDAPAAPAMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 71/156 (45.51%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLD-NDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L++ S KV+     LD   +E++GADIV RA+  PLK IA NAG +  VV+ +V  S N   G+NAATG Y D+  AGI+DP KV R  +++A SVA   L ++  V +IKE +PAMP+   M   G
Sbjct:  389 KEKKDRVDDALSATRAAVEEGIVIGGGAALIKASKKVN-----LDLTGDERIGADIVLRAISAPLKQIAINAGFDAGVVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDIKEDKPAMPSMPDMGGMG 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROMP (60 kDa chaperonin 2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groL2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 68/158 (43.04%), Postives = 99/158 (62.66%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            K+KKLR+EDA+NATKAA           TL  L+  +    +   + EE +GA+IV+ +L  PL  IA+NAG NG+V++E V S   +  G+NAATG+Y D+ AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG P     + Y
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPILKEWADKALSGEELIGANIVEASLTSPLMRIAENAGSNGAVIAENVKSKPFND-GFNAATGDYVDMSAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKDAAPAGAPGMGGDFDY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.589e-27
Identity = 71/155 (45.81%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA             LR    ++ +K +   + EK G DIV+RAL  PL+ IA N G   S+V  KV  S +  +G+NAATG+YEDL+ +G+IDPTKV R  L++ASSVA   L +  +V E  + E A PAG  M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVAYLRAVKALEGVKVS---EGEKFGLDIVRRALEEPLRQIAGNGGYEASIVVNKVKESKDTNFGFNAATGDYEDLVKSGVIDPTKVSRSALQNASSVASLMLTTMALVAEKPKEESAAPAGGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.381e-27
Identity = 68/147 (46.26%), Postives = 99/147 (67.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            +++KLR+EDA NAT AA           TL+ LS+ + AIKET ++ + ++GADIV++AL     LIA+NAG+ G VV EK++ S+  + GYNA T  YE+L+ AG+IDP KV RC L++A+SVA   L +  +VV+  +P+P  PA
Sbjct:  432 EDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVAQ-SLIAQNAGIEGEVVVEKIMFSE-WELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVD--KPKPKAPA 574          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_SORC51.518e-2745.8660 kDa chaperonin 1 OS=Sorangium cellulosum (strai... [more]
CH602_GLUDA1.982e-2744.5260 kDa chaperonin 2 OS=Gluconacetobacter diazotrop... [more]
CH601_GLOVI1.982e-2745.9560 kDa chaperonin 1 OS=Gloeobacter violaceus GN=gr... [more]
CH60_THELT2.589e-2746.6760 kDa chaperonin OS=Thermotoga lettingae (strain ... [more]
CH60_SYNR32.589e-2746.7560 kDa chaperonin OS=Synechococcus sp. (strain RCC... [more]
CH60_DESDG2.589e-2745.5160 kDa chaperonin OS=Desulfovibrio desulfuricans (... [more]
CH60_ARCB42.589e-2745.5160 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]
CH602_PROMP2.589e-2743.0460 kDa chaperonin 2 OS=Prochlorococcus marinus sub... [more]
CH602_ANADF2.589e-2745.8160 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]
RUB2_BRANA3.381e-2746.26RuBisCO large subunit-binding protein subunit alph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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