CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13467 contig Csv1_Contig13467:234..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEYD (60 kDa chaperonin OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=groL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.767e-27
Identity = 68/150 (45.33%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RVEDALNAT+AA            LLR    ++ IK   +N ++++GA+IVK+AL  P+K I  NAGV  +++ EKV  + N  YGY+A    + D+M AGIIDPTKV R  L++A+SVA   L ++ +V EI E E   P  +P
Sbjct:  390 KEKKARVEDALNATRAAVEEGIVPGGGVALLRCQKALEKIK--FENHDQQLGAEIVKKALEEPIKQIIANAGVEATLIVEKVKENKNINYGYDAYAEKFVDMMEAGIIDPTKVTRTALQNAASVAGLMLTTEVLVAEIPEEEKKPPMPSP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SYNY3 (60 kDa chaperonin 1 OS=Synechocystis sp. (strain PCC 6803) GN=groL1 PE=1 SV=4)

HSP 1 Score: 121.324 bits (303), Expect = 5.767e-27
Identity = 72/156 (46.15%), Postives = 98/156 (62.82%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGY 470
            K++KLR+EDA+NATKAA           TL  L+ +++        DEE  GA IV RAL  PLK IA+NAG NG+V+SE+V   +    GYNAA+  Y D++AAGI+DP KV R  L++A+S+A   L ++C+VV+  E E A PAG P  +  Y
Sbjct:  388 KDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLEDWATGNLKDEELTGALIVARALPAPLKRIAENAGQNGAVISERVKEKE-FNVGYNAASLEYVDMLAAGIVDPAKVTRSALQNAASIAGMVLTTECIVVDKPEKEKA-PAGAPGGDFDY 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEMA (60 kDa chaperonin OS=Thermotoga maritima GN=groL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 67/149 (44.97%), Postives = 97/149 (65.10%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV---EIKEPEPAMP 440
            KEKK R+EDAL+AT+AA           TLLR    V+ + E L+ DE K+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ ++V   E K+  P+MP
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDE-KIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETPSMP 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SYNS3 (60 kDa chaperonin 2 OS=Synechococcus sp. (strain CC9311) GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 67/151 (44.37%), Postives = 96/151 (63.58%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            K+KKLR+EDA+NATKAA           TL  ++  ++    +  + EE +GA+IV  AL  PL  IA+NAGVNG+VV+E V  S +   GYNAA G Y D+++AGI+DP KV R  L++A+S+A   L ++C+V ++ E + A  AG  M
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHMAPALEEWAASNLSGEELIGANIVASALTAPLMRIAENAGVNGAVVAENV-KSKSFNEGYNAANGEYVDMLSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKEAAAAGGGM 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SPHAL (60 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 65/146 (44.52%), Postives = 94/146 (64.38%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KE+K RV+DAL+AT+AA            LLR    +D +K    ND+++ G DIV+RAL  P + IA NAG +G+ +  K+L S ++ +G+NAATG YEDL+ AG+IDP KVVR  L+ A+SVA   + ++ +V E+ + E A P
Sbjct:  390 KERKDRVDDALHATRAAVEEGILPGGGIALLRALKALDGLKAA--NDDQQSGIDIVRRALRAPARQIADNAGEDGAWIVGKLLESSDYNWGFNAATGEYEDLVKAGVIDPAKVVRTALQDAASVAALLITTEALVAELPKEEKAAP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 72/157 (45.86%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            LLR  + ++ +K   DN E++ G  IV RA+  PL+ I KNAG   SVV  KVL    + +GYNAA+G Y D++  G++DP KV R  L+HA+SVA   L +DC++ E+ E +PA  AG P D  G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALLRARATLENLKT--DNAEQEAGVKIVLRAIEAPLRQIVKNAGDEPSVVVNKVLEGKGN-FGYNAASGEYGDMLEMGVLDPAKVTRSALQHAASVAGLMLTTDCMIAELPEDKPA--AGMP-DMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 70/156 (44.87%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RVEDALNAT+AA            LLR    V  I    DN + + G +IV +AL  P++ IA+NAGV GS+V  K+L + +  +G++A T +Y D++A GI+DP KVVR  L+ ASSVA   + ++ +V E+ KE  PAMP G  M   G
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRIHN--DNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEDYVDMLAKGIVDPAKVVRTALQDASSVAALLVTTEAMVAELPKEAAPAMPGGGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROMA (60 kDa chaperonin 1 OS=Prochlorococcus marinus GN=groL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.532e-27
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-----GNPMDNSG 467
            K +KLR+EDALNAT+AA           TL++L  ++D++ ++LD D+   G DI+K+AL  P K IA NAG NG VV  ++        G+NAATG YEDL++AGIID  KV+R  L+ A S+A   + ++ ++ +  +PEP  PA     G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAVEEGIVAGGGSTLIKLGEELDSLSKSLDGDQA-TGVDIIKKALSAPAKQIALNAGENGDVVVSEIQRLGK---GFNAATGQYEDLISAGIIDAVKVIRLALQDAVSIASLLITTEVIIAD--KPEPPSPAGGEGGGDPMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THIDA (60 kDa chaperonin OS=Thiobacillus denitrificans (strain ATCC 25259) GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 70/156 (44.87%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  +   AIK   DN ++  G  IV RA+  PL+ I KN G   SVV  KVL  + + +GYNA T  Y D++A G++DPTKV R  L++A+S+A   L +DC+V ++ E + PAMP G  M + G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRAKAAAAAIKG--DNHDQDAGVKIVLRAIEEPLRQIVKNCGDEPSVVVNKVLEGEGN-FGYNAGTSEYGDMVAMGVLDPTKVTRTALQNAASIAGLMLTTDCMVADLPEDKAPAMPMGGGMGDMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THESQ (60 kDa chaperonin OS=Thermotoga sp. (strain RQ2) GN=groL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.837e-27
Identity = 65/147 (44.22%), Postives = 95/147 (64.63%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK R+EDAL+AT+AA           TLLR    V+ + E L+ DE K+GA IV +AL  P+K IA+NAG +G+V+ EK+LS+D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ ++VE  E +   P+
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGVTLLRARKAVEKVIEELEGDE-KIGAQIVYKALSAPIKQIAENAGYDGAVIIEKILSNDDPAYGFDALRGEYCNMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLIVEKPEEKKETPS 533          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THEYD5.767e-2745.3360 kDa chaperonin OS=Thermodesulfovibrio yellowsto... [more]
CH601_SYNY35.767e-2746.1560 kDa chaperonin 1 OS=Synechocystis sp. (strain P... [more]
CH60_THEMA7.532e-2744.9760 kDa chaperonin OS=Thermotoga maritima GN=groL P... [more]
CH602_SYNS37.532e-2744.3760 kDa chaperonin 2 OS=Synechococcus sp. (strain C... [more]
CH602_SPHAL7.532e-2744.5260 kDa chaperonin 2 OS=Sphingopyxis alaskensis GN=... [more]
CH602_CHRVO7.532e-2745.8660 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH601_RHOP27.532e-2744.8760 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_PROMA7.532e-2742.5060 kDa chaperonin 1 OS=Prochlorococcus marinus GN=... [more]
CH60_THIDA9.837e-2744.8760 kDa chaperonin OS=Thiobacillus denitrificans (s... [more]
CH60_THESQ9.837e-2744.2260 kDa chaperonin OS=Thermotoga sp. (strain RQ2) G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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